Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0408 ATGAAGATTCCCTGTTGTTCTTTTTGTATTTGTTTCTCAGCATCGGTCAAAGATCAAGAAACTAAGCACGAAGAGCCAGGGGAAGATGGCGATGGAAACTTTCGCATATTCACTTACAGAGAATTGAATTCTGCCACGCGGGGTTTTCATCCCTCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTATAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTCGATTGAGCTAGATTCCGTAAAAGGAGAGAGGGGTTTTGTGGCAGAATTGAATACACTTGCAAATGTGAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAACCCACAGATACATAGTCTACGATTATATGGAAAACAATAGCCTTCGTCACACTTTCTTAGCTTCTGAGGAAAAAAGAATGACATTCAGCTGGGAGGCTCGGAGAGATGTATCAGTTGGTGTGGCCAGAGTGCTTGCCTTTCTTCACGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGAAATTTCACACCAAAAGTCTCAGATTTTGGCTTGGCCAAGCTGTTAAGAGATGAAAAATCTCACATCAGTACCCAAGTTGCGGGCACATTAGGTTATCTTGCTCCGGAATATGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTGCTTCTAGAAATTGTCAGTGGCCAAAGAGCAGTAGATGATCACGAAGGTGCGAATCGTTTCATAGTTGAGAAGTCCTGGGCAGCGTACGAGGAAAAAGATCTTTTGAGAATGGTGGATCCAATGCTGAAGATGAACTATCACATTGAAGAAGCTAAACGGTTCCTAATGGTGGGGCTTTGTTGCGTGCAAGAAACGGCCAGGATGAGGCCACGAATGTCAGAGGTTGTAGACATGTTGAGCAAAAACATTGAGATGGAGGAGTTTCATGTTTCACGACCAGGATTTGTGAATGATATGAGGAACGCCAGAACGAGGAGGCAAGTAAATTCATCGGAGGAATCAAGTGCTAGTGCAGCAGCATCCTTTGCAGATTCCTCCGGATGGAGTACCTCCAATCTTGCTCGTTAG 1134 0.4436 MKIPCCSFCICFSASVKDQETKHEEPGEDGDGNFRIFTYRELNSATRGFHPSEKIGEGGFGSVYKGQLRDGSLVAVKVLSIELDSVKGERGFVAELNTLANVKHQNLVILRGCCVEGTHRYIVYDYMENNSLRHTFLASEEKRMTFSWEARRDVSVGVARVLAFLHEELQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDDHEGANRFIVEKSWAAYEEKDLLRMVDPMLKMNYHIEEAKRFLMVGLCCVQETARMRPRMSEVVDMLSKNIEMEEFHVSRPGFVNDMRNARTRRQVNSSEESSASAAASFADSSGWSTSNLAR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0408 377 CDD STKc_IRAK 55 323 - -
Vra3g0408 377 SMART serkin_6 49 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0408 377 Gene3D Phosphorylase Kinase; domain 1 18 126 - -
Vra3g0408 377 ProSiteProfiles Protein kinase domain profile. 49 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0408 377 Pfam Protein kinase domain 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0408 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 367 - -
Vra3g0408 377 Gene3D Transferase(Phosphotransferase) domain 1 127 334 - -
Vra3g0408 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vra3g0408 377 SUPERFAMILY Protein kinase-like (PK-like) 31 344 IPR011009 -
Vra3g0408 377 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vra3g0408 377 MobiDBLite consensus disorder prediction 346 377 - -
Vra3g0408 377 PANTHER RECEPTOR-LIKE KINASE 11 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0408 Vra-Chr3 4723972 4726091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0408 37 340 Receptor kinase-like Gene Family AT1G56120 49.508 6.27e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra3g0408 Pkinase 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0408 - - gmx:100790388 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0408 3 4723972 4726091 Vra3g0408 3 4723972 4726091 ECH