Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0407 ATGGGCAACGTCTCAAGCGGCGGCGCCAACCACCGTCGCCGGCACAGCGGAGCTTTAAGGCGGAATCATCCGCCACCTCCACCGCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTTGTGTACCAGGGTGCCGCACCTTATGCGAACCCTACCCTGCATTACCCGCAGTACCATTACCCCGGTTACTACCCTCCGGCGCCTCCCATACCTCATCAGCATCATCATCAACAGCATCAACATCATCATCTACAGCATCAACATCATCATCCACAAAATCAGCATCAACATCATCTGCACATGGACCCGGCCTGGATTCCAGGGCGTTACCCTTGTGGGCCCGTGATGCCTAACCCTGCACCTTTTGTTGAGCACCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGAGTCTCAGGCTTGAACCTGATGAGGGAAATTCTTCCCACTTCCTTATCTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCGTCACCATTTATTTCTTTGCAAAAGAAGGCGAAGACTCCATCCTCACACCAGTGAAGGAAAACAATCCTGCTCCAGTGACAGTGAATTTTGAGCAGGGTCTTGGCCAGAAGTTTAGGCAGCCATCTGGAACTGGTATTGATTTTTCTGTTTTTGAGGAGTCCGAGTTACTGAAAGTGGGTGATATGGATGTGTACCCTCTAGCAGTAAAGGCAGACGCTTCCCCTGGTAATCAAGATGAGTCGGATAGAACTCCAGCATCTGGTAACACAAACTCACAGATTACCCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTATTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAACGGAAGCTGACTTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCGGAGCCTCGGGATACAATTGTTCATCCCTGCCGCCATATGTGTATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTAGGGTCTGAGGAGTGA 1110 0.4991 MGNVSSGGANHRRRHSGALRRNHPPPPPPVTPQPEIAANPFVYQGAAPYANPTLHYPQYHYPGYYPPAPPIPHQHHHQQHQHHHLQHQHHHPQNQHQHHLHMDPAWIPGRYPCGPVMPNPAPFVEHQKAVTIRNDVNIRKESLRLEPDEGNSSHFLISFSFDATVSGSVTIYFFAKEGEDSILTPVKENNPAPVTVNFEQGLGQKFRQPSGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNQDESDRTPASGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSTEADLDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGSEE* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0407 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 364 IPR013083 -
Vra3g0407 369 SUPERFAMILY RING/U-box 314 359 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 21 35 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 240 260 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 246 260 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 75 96 - -
Vra3g0407 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 95 368 - -
Vra3g0407 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 94 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 1 36 - -
Vra3g0407 369 MobiDBLite consensus disorder prediction 65 100 - -
Vra3g0407 369 SMART ring_2 315 353 IPR001841 -
Vra3g0407 369 PANTHER MAHOGUNIN 1 94 IPR045194 GO:0061630
Vra3g0407 369 PANTHER MAHOGUNIN 95 368 IPR045194 GO:0061630
Vra3g0407 369 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
Vra3g0407 369 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Vra3g0407 369 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 314 354 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0407 Vra-Chr3 4714732 4719571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0407 35 334 C3H Transcription Factor Family AT3G09770 53.698 1.26e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0407 - - gmx:100807343 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0407 3 4714732 4719571 Vra3g0407 3 4714732 4719571 ECH