Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0403 ATGTTCAATGTTATAGGTTTTTCGTTGTTGACAATGGATTCGGTTGCTTACAGGGGATTGCTCTACACAATCTTCATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCACCCTCTCGCTTCGGATGGAAATCCTGAGAATGCTGCTGAGTTGTTTGAGCGGGTATCGCAAAGCGTAAAAGTGAAACACTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAAACCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGATATGCAGATATGAGCAATCCGAGAGGAGCTACAAACAGTTTCTGGAGTTGAAGCCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCTCAAAATCCTTGGAATTTATTGATAAAGTTGTTCTTGTTTTCTCTCCAGATTGCACTAAGGCTAAGCTTCTTAAAGTGAAGCTGTTAATAGCTGATAAAGACTATGAGGGTGCCATTGCTGAGTCAGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAAAAAGGTCTTCGCTCAGATCCCGAGCACAGTGAACTGAAAAAAGCATATTTTCGATTGAAAAATCTACTAAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAACTACGTGTGGCAGTGGAAGAATTCAAAGTTGCTCTTGCTGTAGACCCTGACCATCTTGCGCACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGAAAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAACTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAGCTCTTAATAGAGGATTGGGAGGGAGCTGTGGATGATATGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAGTATCCGTGAAGCAGTAATGAGGGCGGAGAAAGCTTTAAAGATAAGCAAACGTAAGGATCACTACAAGACTTTGGGAATTTCTAAAACTGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAACGTGGACAAAAGAGAAGAAGCAGAAGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTGAGCGATGAAGACAAACGTGTGAGATATGACAGGGGGGAGGACCTTGAAGAGACGGGAATGGGCGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGGGGCCAGCAGTTTACCTTTAATTTTGAGGGGGGCTTCCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGAGGGTTTGAATTTCACTTCTGA 1458 0.4342 MFNVIGFSLLTMDSVAYRGLLYTIFILNFVLVCQLILLHPLASDGNPENAAELFERVSQSVKVKHYTEALDDLNAAIEADPNLSKAYLFRASVLRQICRYEQSERSYKQFLELKPGDSAAEKELSQLLQAQSALETAQSLYDLGNFSKSLEFIDKVVLVFSPDCTKAKLLKVKLLIADKDYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRSDPEHSELKKAYFRLKNLLKKSKSAEDNASKGKLRVAVEEFKVALAVDPDHLAHNVHLHLGLCKVLVKLGRGKDALESCSEALKINEELVEALVQRGEAKLLIEDWEGAVDDMRSAAQKSPQDMSIREAVMRAEKALKISKRKDHYKTLGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEETGMGGGGGFNPFGGGGQQFTFNFEGGFPGGGFGGGFPGGFEFHF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0403 485 ProSitePatterns Nt-dnaJ domain signature. 414 433 IPR018253 -
Vra3g0403 485 SUPERFAMILY TPR-like 46 366 IPR011990 GO:0005515
Vra3g0403 485 PRINTS DnaJ domain signature 373 391 IPR001623 -
Vra3g0403 485 PRINTS DnaJ domain signature 391 406 IPR001623 -
Vra3g0403 485 PRINTS DnaJ domain signature 409 429 IPR001623 -
Vra3g0403 485 PRINTS DnaJ domain signature 429 448 IPR001623 -
Vra3g0403 485 Coils Coil 407 427 - -
Vra3g0403 485 Pfam Tetratricopeptide repeat 63 117 - -
Vra3g0403 485 Pfam DnaJ domain 371 434 IPR001623 -
Vra3g0403 485 ProSiteProfiles dnaJ domain profile. 371 437 IPR001623 -
Vra3g0403 485 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Vra3g0403 485 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Vra3g0403 485 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 485 IPR044620 -
Vra3g0403 485 SUPERFAMILY Chaperone J-domain 365 474 IPR036869 -
Vra3g0403 485 Gene3D Tetratricopeptide repeat domain 41 368 IPR011990 GO:0005515
Vra3g0403 485 Gene3D DnaJ domain 369 477 IPR036869 -
Vra3g0403 485 CDD DnaJ 371 426 IPR001623 -
Vra3g0403 485 SMART dnaj_3 370 429 IPR001623 -
Vra3g0403 485 SMART tpr_5 84 117 IPR019734 GO:0005515
Vra3g0403 485 SMART tpr_5 130 163 IPR019734 GO:0005515
Vra3g0403 485 SMART tpr_5 199 232 IPR019734 GO:0005515
Vra3g0403 485 SMART tpr_5 317 350 IPR019734 GO:0005515
Vra3g0403 485 SMART tpr_5 283 316 IPR019734 GO:0005515
Vra3g0403 485 SMART tpr_5 50 83 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0403 Vra-Chr3 4684952 4689020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0403 367 434 C2H2 Transcription Factor Family AT1G74250 47.222 6.10e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0403 K09523 - gmx:100804685 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0403 3 4684952 4689020 Vra3g0403 3 4684952 4689020 ECH