Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0402 ATGCAAATGATACCCAGTGAGCCCTTTTCACTTTCCAGTACTCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCATCCTCCTCCACCCACCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCGAAAACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAGACATGTGTCCACCACCATGCCTCCAGGGCTCTCGGAGACCTCACCGGAATAAAAAAGCATTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAAAAGTACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCCGAGAGTATAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACTCACAGGGCTTTCTGTGATGCCTTAGCCGAAGAGAGCTCGAGACTTTCCTCAGTTACTACCAGTAGTCTAAATTTCAAGAGCGAAGATGCAAGTGTGATGAATACACAAGCTGGTTTGTCGTCATGTGAATTAATCACTGGTCAGGGAATGCAGAGTGTTCCACACTTTGGTCCACATGGGTTTCGTTTAATGGGAATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGACATCACATTAATAACCCACTTGATGTTCCATCATCAAGTTCCTCAGGTTTGCCTGAGGTTGTGCAAATGGCACAAGCTAATAATGCCTTGATTGATTCTTCTTCAGTATTCTCAAATTTTAGAATGCCTGCCTCCAATTCAAAGGGAGAAGGTGGAGCTTCAGATTTGGCAACAATTTATTCTGAAAGTCAAAACAAGAATTCAATCTCAGCTTCCCCAATGTCAGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTGATGAGCTCATCTTCCACCCAAAGTACCAGTCTCAATAATAGAAATGCAAACCAAACCGGTGACCAACTTAACCAAGTCTTTCACAACATGAACCGACAGGAAAATTTCAATGGAACAAGCAGTAGTGCAACTATGTTGGGTAGTTCTTCGAACTTTAGCTCATTGACACATCCATCAAACAGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGATAAACCTCCATCCAGGCTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGCATGAACAGAAATGGAGGTGGACATCCATTTCTACCCGAAGAGCTTGCCAAGTTTGCTTCCTTAGGCTCATCAATGGGTCTGAACCAATTCATTGCAGGCCATCAATGA 1500 0.4453 MQMIPSEPFSLSSTLPGLPNEQNTNPNPNHPPPPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLSSVTTSSLNFKSEDASVMNTQAGLSSCELITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGHHINNPLDVPSSSSSGLPEVVQMAQANNALIDSSSVFSNFRMPASNSKGEGGASDLATIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNNRNANQTGDQLNQVFHNMNRQENFNGTSSSATMLGSSSNFSSLTHPSNSFDQFLMQNNVEPTQINLHPGSNTVEHNLTRDFLGMNRNGGGHPFLPEELAKFASLGSSMGLNQFIAGHQ* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0402 499 MobiDBLite consensus disorder prediction 1 24 - -
Vra3g0402 499 Gene3D Classic Zinc Finger 43 122 - -
Vra3g0402 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 486 - -
Vra3g0402 499 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Vra3g0402 499 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Vra3g0402 499 SMART c2h2final6 141 161 IPR013087 -
Vra3g0402 499 SMART c2h2final6 106 136 IPR013087 -
Vra3g0402 499 SMART c2h2final6 65 87 IPR013087 -
Vra3g0402 499 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vra3g0402 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Vra3g0402 499 MobiDBLite consensus disorder prediction 25 40 - -
Vra3g0402 499 MobiDBLite consensus disorder prediction 1 49 - -
Vra3g0402 499 PANTHER ZINC FINGER PROTEIN JACKDAW 8 486 IPR033243 GO:0003700
Vra3g0402 499 Gene3D Classic Zinc Finger 127 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0402 Vra-Chr3 4676575 4679133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0402 1 486 IDZ Gene Family AT5G03150 47.740 6.56e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0402 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0402 K25870 - gmx:100789331 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0402 3 4676575 4679133 Vra3g0402 3 4676575 4679133 ECH
Vra3g0402 3 4676575 4679133 Vra8g1210 8 27467605 27470740 PCT