Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0401 ATGAGTATCATCGACATTCTCACCAGAGTTGATTCTATCTGTAAAAAGTATGATAAATACGACGTCGAGAAACAAAGGGATTCCAATATCTCCGCTGACGATGCATTCGCAAAACTCTACGCCTCCGTCGATGCCGAAATCGAGACCTTACTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAAGGCGTCTACTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTATTGGAGGAGGTTCCCAAGTTGCAGAGGTTGGCTATGAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGTACCCAAACAAACGGGAAGTTGGGCAGCTTCTGCCTCACGTCCTGGAATTAGATTTGATTCAGATGGACAATTTGATGATGAATACTTCCATCAAACAGAAGAATCAAGTCGATTTAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATAGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTACCGCTGATGGATGAGATTGATGCTAAGGTGGACAAGGCATCTTCCGACCTTAAAAATACCAATGTTAGACTTCGAGACACAGTGAACCAGTGTGCTAAAAACATGATACGGCATAGAGGACAGATCATTGGATCAATTTGTATGGCATATCTGTATCTCTTGTATTTTCTTGGTAGTATCGTGGTGTGA 804 0.4266 MSIIDILTRVDSICKKYDKYDVEKQRDSNISADDAFAKLYASVDAEIETLLQKAETASKEKSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAVPKQTGSWAASASRPGIRFDSDGQFDDEYFHQTEESSRFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLRDTVNQCAKNMIRHRGQIIGSICMAYLYLLYFLGSIVV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0401 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vra3g0401 267 CDD SNARE_Qc 175 230 - -
Vra3g0401 267 SMART tSNARE_6 165 232 IPR000727 -
Vra3g0401 267 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra3g0401 267 Gene3D - 170 231 - -
Vra3g0401 267 SUPERFAMILY SNARE fusion complex 165 230 - -
Vra3g0401 267 Coils Coil 40 60 - -
Vra3g0401 267 PANTHER SYNTAXIN 1 234 IPR045242 -
Vra3g0401 267 PANTHER SYNTAXIN-73 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0401 Vra-Chr3 4659319 4664312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0401 1 257 SNARE and Associated Proteins AT3G09740 69.318 4.84e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0401 K08506 - gmx:100804155 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0401 3 4659319 4664312 Vra3g0401 3 4659319 4664312 ECH