Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0400 ATGGGGCATAGGCATGTATACAACACATCTCCATTGTTTGAGGGTGAGCCTGACCAGAACTGGAATCATATGCACATTGATCAACACTATGTGCACCTTGGTAGAACTGGCACTTCAGAGAATGGTTCTTTTATTTATCCTCCGGACAATATGTCTATAGATAACATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGGTATGCATCCTCAGGTCACAACATTGATGTACCTCCTCATCAGCCAGATGCATCAGGCACTTCTAATAATGATCATTTTGTGCATTCGTCTAATGCTGGAGCATTCTTTACAGTGTCAGATAATCACGTACACCAACCTTCTTCCAATTATGACAGACATACATTTAATGTTGATAGTAGTTTTGTTGATCTTACAATGGGAAGTGGACAAGGCCCTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTCTACGAGAGAGGCAGTACAAGTAGATACTTCAATGCTGGAAGTTCAAGTGATCTTCCTATATCTTCGGAATTATGGCAGGATAAGCCAAATATTGATTCTCAATATATGCACTGGGATCATTTTACTATGACACCCACATTCAGAGGTTCTGGCCTTTCAGTAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGCTCTGCACTTGATTTGGATTCCAACCCATCAAGGACCCATTTATCCACCAATCATTCTCACACTTCTTACCCTACTCTCCCACCAGTAGACCATTCTAGTTTGGTGGATGTTTCTGGTCAGACTTCCACATTGACAAGGGATTGGAGCCAAATGAACATACCTCCAGCTAATGGAAGGGTTTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCATTTCCTTGTTGGAAGTGGTGCTACTGTTGGCAATGCTTCTGTAGATGTTGGGTGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTGCTCCTACTCAAAGTTTTCAAAATAATCAAACTCAGAATGCTAGGGGAATTCAAAGCAACTATTCTCAGAGATCCACTCCAACTTTTGGGGCTTCTTCGAGCTTGCGCATGGGACATGTAACATCTTTGGATGAAGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCCTTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCAAGTCAAAGATATCGCACGTTGACTGAGGAGAGTGGTCTTGCCGAACGATTTGCCTCTGAGGGTTTCTTGGTTATTGAGCGTGCATCGATGTATGATTCCAGGAATATCCTTGATCAGCACCGAGAAATGAGAATGGACATAGATAACATGAGTTATGAGGACCTACTTGCACTAGGTGAAAGGATTGGCAATGTGAACACTGGACTCTCTGAGGATATGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTGTGAAGAAATTATGCCCTATCTGCAAAGCTTCTGCTTTGGCCGAGGATACAAAGGATAAATAA 1650 0.4236 MGHRHVYNTSPLFEGEPDQNWNHMHIDQHYVHLGRTGTSENGSFIYPPDNMSIDNISFPSHWNSSTRSNGYASSGHNIDVPPHQPDASGTSNNDHFVHSSNAGAFFTVSDNHVHQPSSNYDRHTFNVDSSFVDLTMGSGQGPHKRKSPGISPVYERGSTSRYFNAGSSSDLPISSELWQDKPNIDSQYMHWDHFTMTPTFRGSGLSVKGEGSLRNVRSRSALDLDSNPSRTHLSTNHSHTSYPTLPPVDHSSLVDVSGQTSTLTRDWSQMNIPPANGRVLLPDTSAFGLETSHFLVGSGATVGNASVDVGCFHHEFGTSRNPAPTQSFQNNQTQNARGIQSNYSQRSTPTFGASSSLRMGHVTSLDEGLPMVAESYSSRHPRPLSTLGWRNGDRNGRSRISSQRYRTLTEESGLAERFASEGFLVIERASMYDSRNILDQHREMRMDIDNMSYEDLLALGERIGNVNTGLSEDMFSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSVKKLCPICKASALAEDTKDK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0400 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
Vra3g0400 549 MobiDBLite consensus disorder prediction 219 250 - -
Vra3g0400 549 MobiDBLite consensus disorder prediction 64 96 - -
Vra3g0400 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Vra3g0400 549 CDD RING-H2_TTC3 495 538 - -
Vra3g0400 549 SMART ring_2 496 537 IPR001841 -
Vra3g0400 549 Pfam Ring finger domain 495 538 IPR001841 -
Vra3g0400 549 SUPERFAMILY RING/U-box 486 541 - -
Vra3g0400 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 542 IPR013083 -
Vra3g0400 549 MobiDBLite consensus disorder prediction 376 396 - -
Vra3g0400 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0400 Vra-Chr3 4645507 4654383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0400 1 548 C3H Transcription Factor Family AT2G37150 41.007 3.23e-112 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0400 - - gmx:100803627 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0400 3 4645507 4654383 Vra3g0400 3 4645507 4654383 ECH