Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0399 ATGGCAACACCCAGTTATTCTTTACAGCACACTCCAACATGGGCTATTGCCCTTGTTTCCTTCATTCTTATCTCAATCTCAATCATCTTGGAGCATTTCATCCATCTCATAATCAAATGGCTCAGGAAACATCGAAAGAGCGATTTGGTGGAAGCAATAGAGAGGCTTAAATCAGAGTTGATGATCTTAGGATTCATGTCGCTGTTGTTGACAGTAACACAAGACGCCATAATAGAAATCTGCATTCCAGTGAGGGCTGCAGATACTATGCTTCCATGTCGAAAACGTACTGCCAATGATACTGCAATTTTGGATTCTTGCAGTGCCAAAAGTGCTAGTGAGGTTGCTTTAGTGTCAAAACATGGAATCCATCAACTTCATATGTTCATTTTTGTTTTAGCTGTCATGCAAATTGTGTACAGTATTCTCACCGTTTCTCTGGCAAGGGCTAAGATAAGGCACTGGAAAGCTTGGGATGAAGAGACTCAAACAATTGAATATGAAATTGCCAACGACCCTAATAGATTCAGATACGCAAGGCAAACAACATTCGGAAGACGCCACATATCTACTACTACTGCATCACCAGTGTCTGTTTGGATTAAATGTTTTTTCAGACAGTTCTTTCATTCAGTAGAAAAAGTTGATTACCTCACCTTGAGGCATGGTTTCATATCAGCTCACTTTTCTGCTAGAAACAGCAACTTCGACTTCCAAAAGTACATTGAACAGTCACTTGAGGAAGATTTCAGAATCATAGTGAGCATTAGCCCTGTGATGTGGTTCACTGTTGTTATTTTTCTGCTCGTGGATGTACATGGCTGGCATGTATATCTCTGGTTATCCTATATTCCCCTCTTGCTGGTTCTGGTTGTAGGAGCTAAACTTGAAGTCATTGTAGACGAAATGGCTCTTCAGATGAAAGATGTCAACAGTGTAACCAAAGGGACCCCACTTGTTTCTCCAAGTGATGAATTCTTCTGGTTTGGCCATCCAGGATTTGTGTTAACACTTCTGCATTACACTTTATTTGTGAATGCATTCGAGCTTGCCTTCTTTATATGGGTATCAACACAGTTTGGAATAAATTCTTGCTACCACGAACACAGAACATTTACAGTCATAAGGGTGGTGATAGCGGTAGCAGTTCAAGTCCTATGCAGCTATGTAACTCTTCCCCTTTACGCACTAGTGGCACAGATGGGGTCACAGGTGAAGAGCAAAGCCTTGGCTAAGATTCTGAGGCAGTGGCATGTTGAGGTGAGGGAGAGAAGAAGGAAGCAACAGAAACTTGTGAAGTCTTTTAGTTTTAGCCATATGTCTTCAGAATGGAACCAAGGAAATAAGAGTGCCCTTGAGTTTTCTTCAGGGCTACGTGAAAACGCTCGTTCCTCTAGTGAAGGAGAAATTGTAGAAGCGTTGGAGCATCCGATGATAACACAGGCAAACTCATCAAGTGATCCACCTCCTAGTGTTGTCTAA 1482 0.417 MATPSYSLQHTPTWAIALVSFILISISIILEHFIHLIIKWLRKHRKSDLVEAIERLKSELMILGFMSLLLTVTQDAIIEICIPVRAADTMLPCRKRTANDTAILDSCSAKSASEVALVSKHGIHQLHMFIFVLAVMQIVYSILTVSLARAKIRHWKAWDEETQTIEYEIANDPNRFRYARQTTFGRRHISTTTASPVSVWIKCFFRQFFHSVEKVDYLTLRHGFISAHFSARNSNFDFQKYIEQSLEEDFRIIVSISPVMWFTVVIFLLVDVHGWHVYLWLSYIPLLLVLVVGAKLEVIVDEMALQMKDVNSVTKGTPLVSPSDEFFWFGHPGFVLTLLHYTLFVNAFELAFFIWVSTQFGINSCYHEHRTFTVIRVVIAVAVQVLCSYVTLPLYALVAQMGSQVKSKALAKILRQWHVEVRERRRKQQKLVKSFSFSHMSSEWNQGNKSALEFSSGLRENARSSSEGEIVEALEHPMITQANSSSDPPPSVV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0399 493 Pfam Mlo family 105 442 IPR004326 GO:0006952|GO:0016021
Vra3g0399 493 Pfam Mlo family 7 99 IPR004326 GO:0006952|GO:0016021
Vra3g0399 493 PANTHER MLO-LIKE PROTEIN 1 4 101 IPR004326 GO:0006952|GO:0016021
Vra3g0399 493 PANTHER MLO-LIKE PROTEIN 1 100 489 IPR004326 GO:0006952|GO:0016021
Vra3g0399 493 PANTHER MLO-LIKE PROTEIN 4 101 - -
Vra3g0399 493 PANTHER MLO-LIKE PROTEIN 100 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0399 Vra-Chr3 4639250 4644174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0399 7 429 MLO family AT3G45290 52.144 3.99e-170 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0399 K08472 - gmx:100787201 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0399 3 4639250 4644174 Vra8g2013 8 37956348 37961558 ECH
Vra3g0399 3 4639250 4644174 Vra3g0399 3 4639250 4644174 ECH
Vra3g0399 3 4639250 4644174 Vra4g0304 4 5745955 5751419 ECH
Vra3g0399 3 4639250 4644174 Vra2g0693 2 5898462 5903658 ECH