Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0394 ATGTTTGTTCCATCTCCAATGGCCAACGACTCTTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCCAGATTCCAGAAAAAAGATAACGATACTGATTCGGCGAAGATTTGGACCGTCGACGAAGACGGAAGCGCGAAAATGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCTGAAAATGTTGAAGGATTCAATGTGTTTAGAAATTCCACATCTGTGGCGCAGTCTAGTGGTGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTGAGTGAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGAACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCGCCTCTTCAATGCTTTGACGAATTGAAATCAAGATATAAGTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGACAGACTATTCCAGTACTTTTAGATGGTCGTGAGTGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGAACCAGAAAAGAGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTGGCCAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAATCTTTTAAGAAATTCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACGATTGGCTATCAAGAAGAAGATTGATCTCAGCAGAGTGGAGTATCTTGTCCTTGATGAATCGGATAAGCTTTTTGAGCCCGAATTATTCAAGCAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATTCGCTCGCTTTTTAGTGCTACTTTACCTGATTTTGTTGAAGTTCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGTAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAATTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCCCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAAGAGTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTGCTGCGGAATGTTGCTAATCTAATGGCAGCATCGGGCTGTGAAGTTCCGCCCTGGCTCATGGAGTTCCAAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1485 0.4189 MFVPSPMANDSSFLFSGIRFNRKKFGADIARFQKKDNDTDSAKIWTVDEDGSAKMREAVEEKTASTKKRKRKGNSSENVEGFNVFRNSTSVAQSSGEVQADQESIELSEKKNKKEQNRQLERNAIFRKQHNIHVSGYNVPSPLQCFDELKSRYKCPSYLLRNLKELGFREPTPIQRQTIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKEPEKSGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKNLLRNSDFSKFPCDILISTPLRLRLAIKKKIDLSRVEYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEVRARELMHDAVRVIVGRKNMASETIKQNLIFTGSEEGKLLAIRQSFAESLNPPVLVFPQSKERAKELYGELAFDNIRVDVIHSDSASAYVHRIGRSGRAGKSGEAITFYTEEDIPLLRNVANLMAASGCEVPPWLMEFQKKKWKKHRPKRDSISTKPDL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0394 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 474 IPR001650 -
Vra3g0394 494 MobiDBLite consensus disorder prediction 52 117 - -
Vra3g0394 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 473 IPR027417 -
Vra3g0394 494 Gene3D - 122 354 IPR027417 -
Vra3g0394 494 MobiDBLite consensus disorder prediction 52 76 - -
Vra3g0394 494 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 419 491 - -
Vra3g0394 494 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 12 419 - -
Vra3g0394 494 Pfam DEAD/DEAH box helicase 172 333 IPR011545 GO:0003676|GO:0005524
Vra3g0394 494 SMART ultradead3 167 363 IPR014001 -
Vra3g0394 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 419 491 - -
Vra3g0394 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 12 419 - -
Vra3g0394 494 MobiDBLite consensus disorder prediction 103 117 - -
Vra3g0394 494 Gene3D - 355 421 IPR027417 -
Vra3g0394 494 MobiDBLite consensus disorder prediction 77 102 - -
Vra3g0394 494 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Vra3g0394 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 348 IPR014001 -
Vra3g0394 494 Gene3D - 422 479 IPR027417 -
Vra3g0394 494 CDD DEADc_DDX52 159 351 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vra3g0394 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0394 Vra-Chr3 4607109 4610894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0394 142 467 Eukaryotic Initiation Factors Gene Family AT3G19760 23.733 1.08e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0394 K14779 - gmx:100800969 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0394 3 4607109 4610894 Vra3g0394 3 4607109 4610894 ECH