Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0392 ATGGGGAGGAAGGGAAATTGGTTTTCAAGCGTGAAGAAAGCTCTCAGCCCCGACTCAAAGGAGAAGAAAGATCAGAAATCAAGTACATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTACAGACTTCTGTCTCATACTCAGAAGCTGATAAGCTGCCACCGCCACCATCTGTTCCTCTGCCAGAAGAGATTAAATTAACTGATATTGAAAATGAAATCAGTCATGATCATGTTGTTGAAGTTGTAACTGCCGTTGAAGCCGAGGTTCCTGTTCCTCCTGTTCAGATAGAAACTGTTAGGGTTGAAGCTGCTCGAATTCCTCGTTTTGCTGGTAAACCAAAAGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGACTGGTTAGGCTGAAATTATTGATGGAAGGGTCGGTTGTAAAACGCCAAGCCACGAGTACCCTGCGATCTATGCAGACACTGTCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTGGAGGAGAATCAGGCCCTGCAAAGACAACTCTTACAGAAGCATGCGAGAGAGCTTGAGAGTTTGCGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGGAGAGAAAGAGCATTAGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTTTAAATCCTATGTTCATGGATCCAACAAATCCTGCCTGGGGATGGAGCTGGTTGGAACGATGGATGGCAGCCCGGCCATTAGAGAACCGTAGCCAGGTGGATAAAGAGTTAAATGATCATGGATCCGTGAAAAGCTCAAGCCGCAGCATTACAGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCACTCTCCAACAGCCAGCCAAAATCCTGGCTCACCAAGCTTTCAGTCCACCCCTTCCAAGCGAGTTTCGGCATCTGCTAAGAAATCACAGAAGGCAAGTCCAAGGGGTAGCTGGATTACAGACGAGGACTCTAAAAGCTTGGTGAGTGTCCAGTCAGATCGGTTCCGGAGACACTCAATCGCAGGTTCATCGGTGAGAGATGACGAGAGCCTTGCCAGCTCTCCAGCAATTCCAAGCTACATGGTGCCAACTCAATCAGCAAAAGCCAAATCCAGGACACAAAGTCCATTAGCCCCAGAAAATGGAAAAACTGAGAAAGGATCCTTTGGAACTGCAAAGAAGCGGCTATCTTTCCCAGCTTCACCTTCCAGGCCAAGGCGCCATTCAGGTCCACCGAAGGTAGAAATCAGCTTAAATGCGGAGTTATCTGTGGACAAGGCTGTGGACAGTTGA 1416 0.4668 MGRKGNWFSSVKKALSPDSKEKKDQKSSTSKKKWFGKQKLQTSVSYSEADKLPPPPSVPLPEEIKLTDIENEISHDHVVEVVTAVEAEVPVPPVQIETVRVEAARIPRFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGSVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSLNPMFMDPTNPAWGWSWLERWMAARPLENRSQVDKELNDHGSVKSSSRSITGGEISKSFARFQLNSEKHSPTASQNPGSPSFQSTPSKRVSASAKKSQKASPRGSWITDEDSKSLVSVQSDRFRRHSIAGSSVRDDESLASSPAIPSYMVPTQSAKAKSRTQSPLAPENGKTEKGSFGTAKKRLSFPASPSRPRRHSGPPKVEISLNAELSVDKAVDS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0392 471 Gene3D - 99 142 - -
Vra3g0392 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 466 - -
Vra3g0392 471 MobiDBLite consensus disorder prediction 319 367 - -
Vra3g0392 471 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vra3g0392 471 MobiDBLite consensus disorder prediction 398 422 - -
Vra3g0392 471 MobiDBLite consensus disorder prediction 15 31 - -
Vra3g0392 471 MobiDBLite consensus disorder prediction 34 48 - -
Vra3g0392 471 MobiDBLite consensus disorder prediction 1 60 - -
Vra3g0392 471 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Vra3g0392 471 SMART iq_5 114 136 IPR000048 GO:0005515
Vra3g0392 471 MobiDBLite consensus disorder prediction 319 471 - -
Vra3g0392 471 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0392 Vra-Chr3 4594713 4598836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0392 1 456 IQD Protein Family AT5G03040 55.180 8.24e-156 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0392 - - gmx:100800080 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0392 3 4594713 4598836 Vra3g0392 3 4594713 4598836 ECH