LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra3g0391	ATGTCTGTTCCATCTCCAATGGCCAACGACTCTTCGTTTTTGTTTTCCGGCATTCGTTTCAACAGAAAGAAGTTCGGCGCCGATATCGCCAGATTCCAGAAAAAAGATAACGATACTGATTCGGCGAAGATTTGGACCGTCGCCGAAGACGGAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAGCGTCCACGAAGAAGAGGAAGCGCAAAGGAAACTCTTCTGAAAATGTTGAAGGATTCAATGTGTTTAGAAATTCCGCATCTGTGGCGCAGTCCAGTGGTGAAGTTCAAGCTGATCAGGAGTCTATTGAGTTGTGTAAGAAGAAGAATAAGAAGGAACAAAATCGACAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAATTGAAATCAAGATATAGGTGTCCATCGTATTTGTTGCGTAATCTGAAGGAGCTTGGATTCAGAGAACCAACGCCTATTCAAAGGCAGACTATTCCAGTACTTTTAGATGGTCGAGAGTGCTTTGCGTGTGCACCAACTGGTTCTGGTAAAACCCTTGCATTTGTATGTCCAATGCTTATGAAGCTTAAGGACCCCGAAAAGGGTGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTGCTCAAATATTTCGAGAGTGCAAAAAGCTGGCCAAAAGAAAAAAATTTGGTATTAAGTTAATGACTAAAAGTCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCCACACCACTCCGATTACGATTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTGGAGTATCTTGTCTTGGATGAATCGGATAAGCTTTTTGAACCCGAATTATTCAAGCAGATTGCTTCTGTTCTCAAGGCATGCTCCAACCCCTCAATCATTCGCTCGCTTTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTGAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTGAACAAGAGCGAGGAAATGCTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTTAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATACGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTGCTGCGGAATGTTGCTAATCTAATGGCAGCATCGGGCTGTGAAGTTCCACCCTGGCTCATGGAGTTGCAAAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA	1626	0.4268	MSVPSPMANDSSFLFSGIRFNRKKFGADIARFQKKDNDTDSAKIWTVAEDGSAKTREAVEEKTASTKKRKRKGNSSENVEGFNVFRNSASVAQSSGEVQADQESIELCKKKNKKEQNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSRYRCPSYLLRNLKELGFREPTPIQRQTIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPEKGGIRAVILCHTRELSAQIFRECKKLAKRKKFGIKLMTKSLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVEYLVLDESDKLFEPELFKQIASVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSEQERGNAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRSGEAITFYTEEDIPLLRNVANLMAASGCEVPPWLMELQKKKWKKHRPKRDSISTKPDL*	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra3g0391	541	Pfam	Helicase conserved C-terminal domain	379	482	IPR001650	-
	Vra3g0391	541	SMART	ultradead3	167	364	IPR014001	-
	Vra3g0391	541	SMART	helicmild6	401	482	IPR001650	-
	Vra3g0391	541	MobiDBLite	consensus disorder prediction	51	79	-	-
	Vra3g0391	541	Pfam	DEAD/DEAH box helicase	172	336	IPR011545	GO:0003676\|GO:0005524
	Vra3g0391	541	MobiDBLite	consensus disorder prediction	53	76	-	-
	Vra3g0391	541	Gene3D	-	349	526	IPR027417	-
	Vra3g0391	541	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	12	538	-	-
	Vra3g0391	541	CDD	DEADc_DDX52	159	352	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Vra3g0391	541	CDD	SF2_C_DEAD	361	491	-	-
	Vra3g0391	541	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	148	176	IPR014014	GO:0003724
	Vra3g0391	541	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 57	12	538	-	-
	Vra3g0391	541	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	494	IPR027417	-
	Vra3g0391	541	Gene3D	-	90	348	IPR027417	-
	Vra3g0391	541	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	179	349	IPR014001	-
	Vra3g0391	541	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	360	521	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra3g0391	Vra-Chr3	4587614	4592944	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra3g0391	142	520	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.921	1.92e-51	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra3g0391	K14779		-	gmx:100800969	929.087