Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0388 ATGCACGGAACACCAGAAGAAGAGACGGTGCAGAGGATCGGTTGCGTATCCGTGGACCCATCCGGGTTAATGGAAGTACTCGACATTTACTTTCCTGAACAGCTCTTCACCGTCGAGAAAACCTGGAACAATCTCGCTTCCTCTCTTTTTTCCTTCTTTTCTTCAACGGTGGGACAAAACCTTGTTTCTCAGGTGAAAAGTGGTTGTGGAAACAATACCTTGTCGCTTGACTTTCAGCAGTTCCAACAGATTTATCATGACGAGGAATTTTATAAAATGTTAGAGGAGAAACCTAAAATTGCTCTCACATGCATGAATGCTGCTGTACATAAGGTTTTGCTTTCCAATTGGGAGAATCACAATCTGGAGCTTGGTGCAAAGGTTGATGTTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCATGGTACTGCTGTGAAAGTCAGCGCTGTCAGGCCGCTGGTGGTGCAAATGTTTTTTGAATGCTGTAAATGTAGACAAACAATTTCACGTATATTTCCTGATGGAAAGTACTCTCCACCATCAACTTGCAATTTAAACGGCTGCAAGAGCAAAATCTTTAATCCGTTGCGGTCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAGTTATTAAAACATGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGCGAGCTTAGCCAAGACCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTTTACATCTCAGGATCTGCAGGACTCTAATGCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTGGAATTTGTTGCAAAGTTTAAAGGGGAACACGGTTCAGATTTATTTCGCCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTGCGGAAGCATTCTATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCTGCTGCAGCAGTTTCTCCGCGTGGCATATATGTCTGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTTCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCTTCTGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAGTGTGTATCTATCGCGAAAGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCTGCTGGTGGCCATTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCCGATGAACTTCTGGACAAGCGACTCTCGGACCACATTATGGCACTTCATGGTGGAAATGGACAACTTTCACCAGCACTGAAAAAGCGACGTGGAGATACATCTGATTCCAGAGCTACTGTATCACATAATGCGGAACCTGTAGGAGATTTGGATGTTAGATCTAGATCTGGATCTTTAATTTCAAGATTGAGACTTGACCCACTAAGAGACGGTGATTTTATTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTATGTCTTTCCCAGGATGACAAAGTCAGCTGCAGAAATTTTGCAAAAGTTTTACCTAAAACTGAGGGATCATAATACTTCGGCTGACGGTACTCCTATAACTGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCCGAAGCTCGGGCTCGGCTGGACTTGAGAATAGAAATAACGGACCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAATCCCTGTATGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCACTCATTAAGCAATCGGAATTGGAACAGAAGGATTGCTTTTCAGTATCTGAACTATACAGCCTTGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTAATCGAAAACTTAAACAGTGCTAATTGTCTACTCAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAAGCGTTTAAGACAAGGGGTTAA 2424 0.4171 MHGTPEEETVQRIGCVSVDPSGLMEVLDIYFPEQLFTVEKTWNNLASSLFSFFSSTVGQNLVSQVKSGCGNNTLSLDFQQFQQIYHDEEFYKMLEEKPKIALTCMNAAVHKVLLSNWENHNLELGAKVDVRLHNCPKTMIALKNLKAAYIDKLVSVHGTAVKVSAVRPLVVQMFFECCKCRQTISRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELSQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQFTSQDLQDSNAKTRPAELFDLFSFSSKDLEFVAKFKGEHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSDHIMALHGGNGQLSPALKKRRGDTSDSRATVSHNAEPVGDLDVRSRSGSLISRLRLDPLRDGDFIPLPGQLLRKYIAYARSYVFPRMTKSAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRIEITDQDATDVVEIMKESLYDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALIKQSELEQKDCFSVSELYSLADRISLKVPDIDTLIENLNSANCLLKKGPKTYQVLSSSYARSQAFKTRG* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0388 807 MobiDBLite consensus disorder prediction 566 589 - -
Vra3g0388 807 Coils Coil 463 483 - -
Vra3g0388 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 712 IPR027417 -
Vra3g0388 807 CDD MCM8 352 705 - -
Vra3g0388 807 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 23 801 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 Pfam MCM AAA-lid domain 623 706 IPR041562 -
Vra3g0388 807 PANTHER DNA HELICASE MCM8 23 801 - -
Vra3g0388 807 Pfam MCM P-loop domain 346 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 SUPERFAMILY Nucleic acid-binding proteins 70 272 IPR012340 -
Vra3g0388 807 SMART mcm 138 707 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 SMART AAA_5 392 544 IPR003593 -
Vra3g0388 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vra3g0388 807 Gene3D - 142 271 IPR012340 -
Vra3g0388 807 Gene3D - 326 715 IPR027417 -
Vra3g0388 807 Pfam MCM OB domain 142 270 IPR033762 -
Vra3g0388 807 Gene3D - 169 219 - -
Vra3g0388 807 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0388 Vra-Chr3 4558036 4568159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0388 18 793 Core DNA Replication Machinery Family AT3G09660 70.694 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0388 K10737 - gmx:100784549 1322.76