Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0387 ATGGCCGACGGTCCGTCCAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGTCCCCGCTCTAACGTGCGAGAGCAGGACAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATCGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCGGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCACTAGATACAGAGAGATGGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGAGACACCTCTGGTAAGAAAGATGTTCAACCCGGTCCTAGTGCTCAGCTTACTCATCAAGGTTCTTTTTCCCAAGGGGTTAGTTACACAAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGCCCAGAATAG 516 0.5213 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDTSGKKDVQPGPSAQLTHQGSFSQGVSYTNSQGQHMMVPMQGPE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0387 171 MobiDBLite consensus disorder prediction 119 171 - -
Vra3g0387 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra3g0387 171 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982
Vra3g0387 171 MobiDBLite consensus disorder prediction 135 164 - -
Vra3g0387 171 Gene3D Histone, subunit A 16 151 IPR009072 GO:0046982
Vra3g0387 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vra3g0387 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
Vra3g0387 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vra3g0387 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vra3g0387 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vra3g0387 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra3g0387 171 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0387 Vra-Chr3 4551197 4556602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0387 17 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.616 2.29e-87 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra3g0387 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0387 K08065 - gmx:100798667 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0387 3 4551197 4556602 Vra8g1211 8 27507517 27508831 PCT