Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0385 ATGTTGGATCTTAACCTCAACGTCGATTCCCCCTCCGACAACAACCACACGCCTCCGCTCTCCGTCGCTCAAATGGAGAGTTCCGGAAGTTTCAATTCCTCCGTTGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAGCAACACCGCTTCCCCTTCCGCAGGAGAATCCTCTGTCCGCACCATCCAGCTCTTTCCGGCCACCGACTCAGCAGTCTCGCCGACTTGGCTGGACTTCTCGTCGAAGGTGGATCAGCACGGTGCCGCCTCGGAGCAGAGGATCACTCCTCGGCAGCCGCTGGTGAAGAAGAGCCGCCGTGGACCGAGGTCGCGGAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGGACAGGAAGATGGGAATCTCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGCGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGACGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACGGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTTTGGGTAAAAAGGTTTATTGCTGCAGGTATATATATCTTGGGCTATTCGACAGCGAGTTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAACGAAGATGGCAAGCAAAATATTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACACCGACTCTCAAATCAAGAACACACCTAGCAACGGAAGTGGTTTGAAAGGTCCACCCAGCTGGGATGATATCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTTCAGGCATCTCAAGGCATCTACAGAGTATCTGGGCATCATCCTTCCACCTGGAATGGTGGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCGTGCCTAATTGGGCATGGCAAGTCCAAGGTCCGTATGGCGGGCCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCATTTTCCAAACATGACTTTCCTCCACTCACATTTTCCACCATCGATCACCAACTCGGGCACCGTATCCCCTTTCTTCATCGGTAGCTGA 1398 0.5114 MLDLNLNVDSPSDNNHTPPLSVAQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNSNTASPSAGESSVRTIQLFPATDSAVSPTWLDFSSKVDQHGAASEQRITPRQPLVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKVYCCRYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDGKQNIDLNLGIAPPSYTDSQIKNTPSNGSGLKGPPSWDDIPVEKRFMFEHSGSRSLNVQASQGIYRVSGHHPSTWNGGNFFPIYEETAIEKRMEAGPVPNWAWQVQGPYGGPTLTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNSGTVSPFFIGS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0385 465 CDD AP2 218 283 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 455 - -
Vra3g0385 465 MobiDBLite consensus disorder prediction 100 128 - -
Vra3g0385 465 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 455 - -
Vra3g0385 465 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 PRINTS Ethylene responsive element binding protein signature 263 283 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Vra3g0385 465 ProSiteProfiles AP2/ERF domain profile. 219 281 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 MobiDBLite consensus disorder prediction 7 26 - -
Vra3g0385 465 SUPERFAMILY DNA-binding domain 218 283 IPR016177 GO:0003677
Vra3g0385 465 MobiDBLite consensus disorder prediction 1 26 - -
Vra3g0385 465 Pfam AP2 domain 218 273 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 Pfam AP2 domain 127 175 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 ProSiteProfiles AP2/ERF domain profile. 127 183 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 Gene3D AP2/ERF domain 218 282 IPR036955 GO:0003700|GO:0006355
Vra3g0385 465 Gene3D AP2/ERF domain 126 185 IPR036955 GO:0003700|GO:0006355
Vra3g0385 465 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
Vra3g0385 465 SMART rav1_2 219 287 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0385 Vra-Chr3 4515814 4518722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0385 107 317 AP2-EREBP Transcription Factor Family AT4G36920 76.636 2.08e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vra3g0385 AP2 4.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0385 K09284 - gmx:100808212 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0385 3 4515814 4518722 Vra3g0385 3 4515814 4518722 ECH