Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0383 ATGGCAATGGCGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGACTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTTTGAAAGTTCAGAAGAACGGGACAGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCACAAAAGGAATCCAAAAATGTTCTGGTGCCATTACCAGCTTCCCTGGCATATGTTTCTCCCACGTGGGATGAAAATTTCTTGCTCATGAATTCTGGATCCAACAGATCACTGCCCTATCTGGATGAACTCACCAATCTTCATGGAGATGAAGCTGATATTGGATCAAAGGGGGTAACAATAATTGGCAACAGCTGCGTTAGTGATGTTGGGAATTCTACTACAAAGTTGTCTGCTACTGAGATACCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAATGCCATGTCATCATACGATGCCAACACGGCATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAAACATTAA 843 0.4223 MAMAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKESKNVLVPLPASLAYVSPTWDENFLLMNSGSNRSLPYLDELTNLHGDEADIGSKGVTIIGNSCVSDVGNSTTKLSATEIPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTKGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRNAMSSYDANTALRQELMSRNRQRIYNVKQLNKH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0383 280 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Vra3g0383 280 MobiDBLite consensus disorder prediction 79 99 - -
Vra3g0383 280 SMART sant 25 73 IPR001005 -
Vra3g0383 280 Gene3D - 29 76 - -
Vra3g0383 280 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Vra3g0383 280 MobiDBLite consensus disorder prediction 1 16 - -
Vra3g0383 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Vra3g0383 280 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g0383 280 CDD SANT 28 71 IPR001005 -
Vra3g0383 280 PANTHER PROTEIN REVEILLE 8 3 260 - -
Vra3g0383 280 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vra3g0383 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Vra3g0383 280 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Vra3g0383 280 PANTHER SWI/SNF COMPLEX-RELATED 3 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0383 Vra-Chr3 4497514 4500637 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra3g0383 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0383 - - vra:106757230 551.206