Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0378 ATGTTGGATCAAGTGAAAAATGAAAAAAGAAAAAGAGAAACACTTTGCGAAAGACAGACATATTTGAAGATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGACCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTTTTAGCTGGTGCAATCAATGTTTCTCCTGATATTTCATCTTCTCAGGCTACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTGCAGCATTGAATCACCCCCATGCAGGGTTTGATTCTTGTCAGGCTGATACTTTTGGAGCTGCACTCAGTAACTCTTCTGACAAGATTCCAAAACTTGACAACAATCAGTCCCTCATATACAAACCAACGGCAAAACTTGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGAAGGGAAATTGCAGCACTGGTCAGCAGCAAACACGGCAGTTAATGGAGGCCAATTTTCAACATTCCATCAATGAAAAGTTTAGAAGCAGCATGAGTTCACATCTTGATCAGAGTATTGCCCGGCATACAGAAATAAACGAGATCAGTGAAGCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGACCAGAAGACTTTAACATCCTCTGCGAATTGTGATCGACCTTCTTATGATGGGTACAACTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGTGAGTACCCCAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAGATTGTTTATAAAGGTGAACATAACCATTTGAAGCCACAGCTTCCTAAAAGAAGCACAGCAACAGGGACACAAGGTTCGGGGGTGTTGTCTGATGGAATGGTTCAAGATGTGTGGAGTAATAGTCACAGCGAGAGGAATGAAGGCAATGAAAGTAGAGTTGAGAACGCAGGAGGAGGACTATCTGTGCTTTCAGATTATTACGTCAAACTTCCACAGCCTAATGATTCTGGTCTAAATATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTTTGAGGCACAGGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCTATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCACGGATTGTGATGCAAAGTTTCACTGATTCTGAAATACTTGGAGATGGATTTCGCTGGAGGAAATACGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGCTACTACAGATGTACTAATGTAAAGTGCAACGTTCGCAAACACGTGGAGAGAGCAATAGATGACCCGAGATCATTTGTGACCACATATGAAGGAAAACACAATCATGATATGCCTCTCAAGAACACAGGAAATGTGGCCTCTGAGAGAGACTCACAGGCTTCTCTTTGTAAAGATAAAGCATGA 1494 0.4224 MLDQVKNEKRKRETLCERQTYLKMDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDISSSQATVSAIRPKTVRFKPAALNHPHAGFDSCQADTFGAALSNSSDKIPKLDNNQSLIYKPTAKLVSKTTVSLLANMKGNCSTGQQQTRQLMEANFQHSINEKFRSSMSSHLDQSIARHTEINEISEASKMVQQNTEEDQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHLKPQLPKRSTATGTQGSGVLSDGMVQDVWSNSHSERNEGNESRVENAGGGLSVLSDYYVKLPQPNDSGLNIGATNAGGGSTENSCGLSGECEEGSKGFEAQEDEPRSKRRKNENLSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHDMPLKNTGNVASERDSQASLCKDKA* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0378 497 MobiDBLite consensus disorder prediction 466 497 - -
Vra3g0378 497 Gene3D WRKY domain 401 476 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 Gene3D WRKY domain 204 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 MobiDBLite consensus disorder prediction 347 389 - -
Vra3g0378 497 SUPERFAMILY WRKY DNA-binding domain 408 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 MobiDBLite consensus disorder prediction 347 361 - -
Vra3g0378 497 ProSiteProfiles WRKY domain profile. 219 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 MobiDBLite consensus disorder prediction 273 295 - -
Vra3g0378 497 SUPERFAMILY WRKY DNA-binding domain 216 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 MobiDBLite consensus disorder prediction 368 389 - -
Vra3g0378 497 Pfam WRKY DNA -binding domain 417 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 Pfam WRKY DNA -binding domain 219 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 ProSiteProfiles WRKY domain profile. 410 475 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 SMART WRKY_cls 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 SMART WRKY_cls 415 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra3g0378 497 MobiDBLite consensus disorder prediction 278 295 - -
Vra3g0378 497 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 478 IPR044810 GO:0003700
Vra3g0378 497 PANTHER WRKY TRANSCRIPTION FACTOR 44 30 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0378 Vra-Chr3 4464493 4470857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0378 116 476 WRKY Transcription Factor Family AT2G37260 44.974 1.41e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra3g0378 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0378 - - vra:106757963 996.882