Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0377 ATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAACAAGATTGATAAGATGGAAGTTCAGGACAGTCTGGTTGGTCAGATCAAAGCCACCCCAGGAAAGTTGAAGAGAAATACATCCACAAATTCAAAAGATACATCTAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTCCGGGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAGTGTCTTCTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATCAATCAGGTTGTTGCCATTAAGCAACTTGACCGAAATGGGCTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTACTTCATCATCCAAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCGTTAGGATCCTTGGAAGACCACTTGCATGACATTCCACTTGGCAAGAAACGACTAGATTGGAACACCCGAATGAGAATAGCTGCTGGTGCAGCCAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATTTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCAGCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTCGGCCCAGTTGGGGAGAACACACATGTATCAACAAGAGTTATGGGAACTTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACAGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATAGAAGAAAGTTTTCTCAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCGCGAGGACTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTCATAGCTGATGTTGTAACAGCTTTGTCTTACCTTGCTTCACAAAAATATGATCCCAATACACACACAGTCCAAAACTCACGCCTTGCTCCGGGTACCCCTCCTAGAACCAGGAGGGGGCTATGA 1140 0.4377 MGWIPCSGYSGTKNKIDKMEVQDSLVGQIKATPGKLKRNTSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPLGKKRLDWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYQPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTHTVQNSRLAPGTPPRTRRGL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0377 379 PANTHER OS07G0668900 PROTEIN 1 377 - -
Vra3g0377 379 MobiDBLite consensus disorder prediction 34 54 - -
Vra3g0377 379 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Vra3g0377 379 MobiDBLite consensus disorder prediction 32 54 - -
Vra3g0377 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 377 - -
Vra3g0377 379 Pfam Protein tyrosine and serine/threonine kinase 77 345 IPR001245 GO:0004672|GO:0006468
Vra3g0377 379 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Vra3g0377 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0377 379 CDD STKc_IRAK 79 347 - -
Vra3g0377 379 SUPERFAMILY Protein kinase-like (PK-like) 55 347 IPR011009 -
Vra3g0377 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vra3g0377 379 MobiDBLite consensus disorder prediction 359 379 - -
Vra3g0377 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Vra3g0377 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0377 379 PIRSF ILK 11 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0377 Vra-Chr3 4457737 4460958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0377 33 352 Glycoside Hydrolase AT3G07070 68.125 3.70e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra3g0377 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0377 - - gmx:100818024 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2811 8 45625616 45630018 Vra3g0377 3 4457737 4460958 ECH
Vra3g0377 3 4457737 4460958 Vra3g0377 3 4457737 4460958 ECH