Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0372 ATGGTTAGATTCTGCTGGAAGCCAGCTTCTGTGGGTGATGATGGAGATGTAAATGGGAGAGTTGAGGGACTGCTATGGTACAAGGATTTAGGAAACCATCTTTATGGGGAATTCTCAATGGCTGTGATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGACTATCTGGGGCCTCAAGGAACCTTTATTGGTGTATACGATGGCCATGGTGGTTCTGCAGCCTCACAGTTTGTCAGTGACAATCTCTTCGCCAATGTCAAGAGTTTCGCAGCTGAGCATCGAGGCATATCAGAGAATGTTATACGAAGGGCATTTTCTGCAACAGAAGAGGGTTTTCTGTCTGTTGTGAAGAAACAGTGGCTAAGCAAACCACAGATTGCATCTACCGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTATATGTTGCAAATGCAGGAGACTCAAGGGTGGTGCTGGGGAGAGTAGAGAGAGCAACAAGGGAAACAACAGCTATCCAATTGTCTGCAGAGCACAACGTTAACATCCAAATGGAGAGAGATGAAGTTCGGACAAGGCACCCTTATGATCCACAAATCGTGGTTAAGAAACACAATGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAACAAGAATTTAACAGGGAGCCTCTGCCGAATAAGTTTAGACTACCCGAACCCTTCTTTAAGCCAATTCTTAGCTATGAACCAGAAATATCAGTGCATAAACTTGGTCCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTGTGGGAGCAACTTAGCAACCAAGAAGTTGTGAATATAGTCAGCAATAGTCCACGCAATGGTATTGGTAGGAGACTTGTGAAAGCTGCACTTCGAGAAGCAGCAAGGAAGAGAGAAATGAGAGTGTCAGACCTGCAAAAGATAGAAGAAGGAGTGAGGAGACACTTCCACGATGATATTACAGTTATTGTTGTATATCTAAATCCCAAACTCATAGATAATAGCTCTCTATTGGCTTCTCCTCTTTCAATCAGAGGAGGTGGGTCAGCCAATTTTTAG 1113 0.4349 MVRFCWKPASVGDDGDVNGRVEGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGSAASQFVSDNLFANVKSFAAEHRGISENVIRRAFSATEEGFLSVVKKQWLSKPQIASTGTCCLAGIICNGMLYVANAGDSRVVLGRVERATRETTAIQLSAEHNVNIQMERDEVRTRHPYDPQIVVKKHNVWRVKGLIQVSRSIGDAYLKKQEFNREPLPNKFRLPEPFFKPILSYEPEISVHKLGPEDQFLIFASDGLWEQLSNQEVVNIVSNSPRNGIGRRLVKAALREAARKREMRVSDLQKIEEGVRRHFHDDITVIVVYLNPKLIDNSSLLASPLSIRGGGSANF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0372 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Vra3g0372 370 PANTHER ALPHABET, ISOFORM E-RELATED 4 368 - -
Vra3g0372 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vra3g0372 370 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 4 368 - -
Vra3g0372 370 Pfam Protein phosphatase 2C 69 307 IPR001932 -
Vra3g0372 370 CDD PP2Cc 35 345 IPR001932 -
Vra3g0372 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Vra3g0372 370 Gene3D - 28 354 IPR036457 -
Vra3g0372 370 SMART PP2C_4 31 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0372 Vra-Chr3 4422152 4424404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0372 1 366 PP2C-type Phosphatase Gene Family AT3G12620 65.854 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0372 K01102 - gmx:100815902 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0372 3 4422152 4424404 Vra3g0372 3 4422152 4424404 ECH
Vra3g0372 3 4422152 4424404 Vra8g0946 8 20978720 20980949 PCT