Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0366 ATGTCTCGTCTAACGCCGCTGCCGCCGCCACCACCACAACCCAACACTATTCTCGACGACAGGTTTCCTTTCTTCAACCAATCCATGGACCTGGTCCAACTCCCAAACCCGCCAACAACACGAACCCGATCCCGCACCCTCGCCGATCTCCTAAACCGCGTCCAAGACGCTCAAAACGACACACCACCTGCACCACCCCACCATGTTCTTGACCTCTCCTCCTCCTCCTCCACCCACCCCTTTGTCCTCTCCTTTTTCAATTTAACCTACAGTGTCAAGCTTCGCCGCAAGTTCACTTTTTTTCCCACCACCACCGTTTTCCCACCCGACCACGAAACTAAACCCAACGGCACCAAGACTCTCCTCAACGACATCTCCGGCGAGGCCAGGGACGGCGAGATCATGGCTGTCCTCGGTGCCAGCGGCTCTGGCAAGTCCACTCTCATCGACGCCCTCGCCAACCGCATATCAAAGGAAAGTCTCAAAGGTACAGTCACCCTAAACGGCGAGGTTTTAGACTCAAGTCTTTTAAAGGTGATTTCCGCTTATGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTCGAAGAGACGCTCATGTTCGCAGCGGAGTTCAGACTCCCTCGCTCCCTCTCGAAATCCAAGAAGAAAGCACGCGTCCAGGCCTTGATAGACCAGCTCGGCCTCCGCTCCGCCGCCTCCACCGTAATCGGCGACGAGGGCCACCGCGGCGTGTCCGGGGGAGAACGTCGCCGCGTCTCTATCGGAATCGACATCATCCACGATCCCATCGTGCTCTTCCTCGACGAACCAACTTCGGGCCTCGACTCCACAAGTGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATCGCTCAGAGTGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTAGGCTTATTGGACCACTTGATCTTCCTCTCCCACGGTAACACCGTCTACAGCGGCTCTCCGGTGAACCTCCCAGCCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAAAACCGAACAGAATTCGCGCTGGACCTAATTCGAGAACTGGAAGAACAACCCAGTGGGACAAAGAGTTTAGTAGACTTCAACAAATCATGGCAGCTGAAAGAAAAAAACTCGGTCCAGTCCCAGAATGATCACAAGCCCAAACCATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCAGAGGGAAACTGGTGTCCGGCGCTAACGGTAACGGCAAGAACTCAACGGCGGCAGTTTCCGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAAATGGCGGTGATAGGAAAAAGGTCTCTGACGAACTCACGAAGGTTGCCAGAGTTATTCGGGATTCGTTTAGGTGCAGTTCTTGTGACGGGGGTAATCTTGGCAACAATCTTCTGGCACCTGGATGATTCACCAAAAGGGGTCCAGGAGCGCGTGGGGTTCTTCGCCTTCGCCATGTCCACCACGTTTTACACCTGCGCCGAAGCCATCCCAGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAGACAGCTTACAACGCCTACCGTCGCTCTTCCTACGTCCTCTCACACGCAATCATCTCACTCCCTTCCCTGCTCTTTCTCTCTTTCACCTTTGCAGCCACCACCTTTTGGGCCGTGGGCCTGGCGGGAGGCTCTTCGGGCTTTCTCTTTTACTTTCTGGTGATCGTGGCCTCCTTCTGGGCTGGAAGCTCCTTCGTGACGTTCCTGTCGGGAGTGGTGTCGCATGTGATGATAGGGTTCACGGTGGTGGTTGCGATCTTGGCCTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGAATGCCTCCGTACTGGATATGGTTCCACTACCTGTCACTGGTGAAGTACCCGTACGAGGGAGTGTTGCAGAATGAGTTCGACGTTAACTCTCCGAGGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCCTTGGGGATGGTGCCGGAGACACTGAAAGTGGAGCTGCTTAAGAGCATGAGCAAGACGCTGGGCATGAACATCACAAGGTCCACCTGCGTGATCACCGGAGCGGATGTGCTGAAGCAGCAGGGGATAACGCAGCTGAGCAAATGGAGCTGCTTGTGGATCACGGTTGCATGGGGATTCTTCTTTCGCTTCCTCTTTTATTTGACGCTTCTCTTTGGGAGCAGGAACAAGAGGAGGTAG 2235 0.5468 MSRLTPLPPPPPQPNTILDDRFPFFNQSMDLVQLPNPPTTRTRSRTLADLLNRVQDAQNDTPPAPPHHVLDLSSSSSTHPFVLSFFNLTYSVKLRRKFTFFPTTTVFPPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTVTLNGEVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAASTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDHLIFLSHGNTVYSGSPVNLPAFFSEFGHPIPENENRTEFALDLIRELEEQPSGTKSLVDFNKSWQLKEKNSVQSQNDHKPKPSLKDAISASISRGKLVSGANGNGKNSTAAVSVPAFANPFWMEMAVIGKRSLTNSRRLPELFGIRLGAVLVTGVILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHAIISLPSLLFLSFTFAATTFWAVGLAGGSSGFLFYFLVIVASFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRMPPYWIWFHYLSLVKYPYEGVLQNEFDVNSPRCFVRGIQMFDNTPLGMVPETLKVELLKSMSKTLGMNITRSTCVITGADVLKQQGITQLSKWSCLWITVAWGFFFRFLFYLTLLFGSRNKRR* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0366 744 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524
Vra3g0366 744 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 60 737 - -
Vra3g0366 744 Gene3D - 111 336 IPR027417 -
Vra3g0366 744 Pfam ABC transporter 122 274 IPR003439 GO:0005524
Vra3g0366 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 337 IPR027417 -
Vra3g0366 744 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 60 737 - -
Vra3g0366 744 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 101 346 IPR003439 GO:0005524
Vra3g0366 744 SMART AAA_5 131 346 IPR003593 -
Vra3g0366 744 Pfam ABC-2 type transporter 441 647 IPR013525 GO:0016020|GO:0140359
Vra3g0366 744 Pfam ABC-2 type transporter 303 395 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0366 Vra-Chr3 4377416 4379865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0366 121 372 Calmodulin-binding Proteins AT2G36910 25.385 1.14e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0366 K05681 - gmx:100781319 1236.09