Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0365 ATGGGGAGGGGAGGCCAAGATTATGGGAAGCCGGAGAACACGAGTTCCGGAGCTTCGGACCGTGAAATCTTCAAGGCATGGGCCAAGGACGTGCGAGAGTGCGAGGAACACTTTAAGGTGAACGTGAAAGTGGGGTTGAATCACGAAGAGGTCGAGAATCGGCAAAAGATCTATGGATTGAACGAGTTGGAGAAGCACGATGGTCCATCGATATGGAGTCTGATTCTCGAGCAGTTCAACGACACGCTGGTTCGGATTCTCCTCGCCGCCGCAATAATTTCCTTCGTGCTCGCTTGGTACGACGGAGACGAAGGCGGTGAGATGGAGATAACGGCGTTCGTTGAGCCTTTGGTGATATTCCTAATACTAATCGTCAACGCGATTGTTGGCGTGTGGCAGGAGAGCAATGCGGAAAAGGCGCTTGATGCGCTGAAAGAGATTCAGTCGGAGCACGCGGTGGTTATTCGAGAGGGCACGAAAGTCCCCGGTTTGCCTGCGAAGGATCTCGTACCTGGCGACATCGTGGAGCTTAAGGTTGGCGATAAGGTGCCTGCAGATATGCGCGTTGTGGAATTGATCAGTTCCACTTTGCGGTTGGAGCAGGGCTCTCTGACTGGAGAAAGTGAAGCGGTGAATAAGATCAACAGGCGTGTGGAGGAGGATGCTGATATCCAGGGGAAGAGATGTATGGTTTTCGCGGGGACCACTGTTGTTAACGGGCATTGCTTTTGCTTGGTCACTCAGACGGGCATGGACACGGAAATTGGGAAGGTGCATACGCAGATACATGTGGCGTCGCAGAGTGAGGAAGATACCCCGTTGAAGAAGAAGCTCAACGAGTTTGGAGAGAACCTAACCAAGATAATTGGACTTATATGTATTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTTACATGGGACTACGTGGATGGCTGGCCCAGGAATTTCAAGTTTTCATTTGAAAAGTGTACCTATTACTTTGAGATTGCTGTGGCGCTGGCTGTGGCTGCTATTCCAGAAGGTTTGCCGGCTGTCATCACTACTTGCCTGGCTCTTGGTACTCGCAAGATGGCCCAGAAGAACGCCCTGGTTCGGAAACTACCGAGCGTGGAGACTCTGGGTTGCACCACTGTGATTTGTTCAGATAAAACTGGCACACTGACTACCAATCAAATGGCTGTGTCGAAATTAGTCGCAATTGGCCATAATGTGGACACACTTCGAGCCTTCAAGGTGGAAGGAACTACGTACAATCCAGCTGATGGTCAAATTGAGAACTGGCCGACTGAAGGATTGGATGCTAATCTTCAGATGATTGCGAAAATAGCTGCTATCTGTAATGATGCCGGAGTCGCACAATCAGAGCATAAGTTCGTCGCCCATGGAATGCCTACTGAAGCAGCTTTAAAGGTGTTGGTAGAGAAGATGGGCCATCCTGAAGGATCCAAGGATATTCGGTCGGCAAGCACAAGTACCTTGCTGCGTTGTTGTGAATGGTGGAATGAGCATGACCGACGGCTTGCTACTCTTGAGTTTGATCGTGACCGGAAGTCAATGGGCGTCATTGTCGACTCTGGTCTAGGAAAAAGGTCGCTTCTAGTTAAGGGTGCTGTGGAAAACGTGTTAGACAGAAGCACTAAAATTCAGTTGCGAGATGGTTCTGTAGTGAACCTGGATGATAATGCTAGGAACCTTGTATTGCAAGCACTTCATGAAATGTCAACTAGCGCATTGCGCTGTTTGGGATTTGCTTACAAGGATGAGCTCCCCAAATTTGAAAACTATAGTGGTAGTGACGATCATCCAGCACACCAGCTTTTGCTTAATCCTTCCAATTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGACCCCCCTAGGGAGGAAGTATACCAAGCAATTGAAGACTGCAGAGAGGCTGGAATCCGTGTTATGGTTATAACTGGGGACAACAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTACCCCTGATGAAGACATTACTTCTAAAAGTTTGACGGGTAAAGATTTTATGGAATTGCGTGATAAAAAGGCATATTTGAACCAGAGTGGGGGCCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGAAGGAGAGGTGGTGGCCATGACAGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGCGTTGCAATGGGCATTGCAGGGACTGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCGGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAACATGAAGGCTTTCATAAGGTATATGATCTCTTCCAATATTGGCGAGGTTGCATCAATATTTTTAACAGCTGCTCTAGGTATTCCTGAAGGATTAATACCTGTCCAGCTTTTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTCTAGGATTTAATCCTCAAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCGTTAATTAATTTGTGGATTTTATTCCGCTATATGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACACGGTTCTTTCTTGGGTATTGACCTAGCTGGGGATGGACATACTCTTGTCACTTATACTCAACTTGCCAACTGGGATCAATGCTCCTCATGGAAGAACTTCACTGCTTCTCCATTCACTGCCGGTTCTAAAACAATCACGTTTGACAACCCCTGTGATTACTTTCACACTGGTAAAGTGAAGGCTATGACATTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTGAATGCCCTATCTGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTAGCAATGTCAGTATCATTTGGTCTACACTTTTTGATCTTGTACGTGCCATTCTTGGCACAAGTATTTGGTATCGTGCCCCTGAGCTTGAACGAGTGGCTTTTAGTTTTGGCTGTTGCACTTCCTGTCATTCTGATTGACGAGATTCTGAAATTTGTGGGGAGATGTACAAGTGGGCGTCGACCATCAACTTCAAGAAAATCAAAGCAAAAATCAGAGTAG 3186 0.4652 MGRGGQDYGKPENTSSGASDREIFKAWAKDVRECEEHFKVNVKVGLNHEEVENRQKIYGLNELEKHDGPSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAVVIREGTKVPGLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKINRRVEEDADIQGKRCMVFAGTTVVNGHCFCLVTQTGMDTEIGKVHTQIHVASQSEEDTPLKKKLNEFGENLTKIIGLICILVWLINVKYFLTWDYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGHNVDTLRAFKVEGTTYNPADGQIENWPTEGLDANLQMIAKIAAICNDAGVAQSEHKFVAHGMPTEAALKVLVEKMGHPEGSKDIRSASTSTLLRCCEWWNEHDRRLATLEFDRDRKSMGVIVDSGLGKRSLLVKGAVENVLDRSTKIQLRDGSVVNLDDNARNLVLQALHEMSTSALRCLGFAYKDELPKFENYSGSDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFTPDEDITSKSLTGKDFMELRDKKAYLNQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPQDKDIMKKPPRRSDDSLINLWILFRYMVIGIYVGLATVGVFIIWYTHGSFLGIDLAGDGHTLVTYTQLANWDQCSSWKNFTASPFTAGSKTITFDNPCDYFHTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSLNEWLLVLAVALPVILIDEILKFVGRCTSGRRPSTSRKSKQKSE* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Vra3g0365 1061 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Vra3g0365 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1044 IPR023298 -
Vra3g0365 1061 Gene3D - 45 265 - -
Vra3g0365 1061 Gene3D - 378 776 IPR023214 -
Vra3g0365 1061 SUPERFAMILY Calcium ATPase, transduction domain A 150 260 IPR008250 -
Vra3g0365 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1059 - -
Vra3g0365 1061 SFLD p-type atpase 362 783 IPR044492 -
Vra3g0365 1061 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Vra3g0365 1061 SUPERFAMILY HAD-like 379 835 IPR036412 -
Vra3g0365 1061 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Vra3g0365 1061 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Vra3g0365 1061 Gene3D - 77 1043 - -
Vra3g0365 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0365 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0365 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g0365 1061 Pfam Cation transporting ATPase, C-terminus 816 1041 IPR006068 -
Vra3g0365 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Vra3g0365 1061 Gene3D - 391 632 IPR023299 GO:0000166
Vra3g0365 1061 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1059 - -
Vra3g0365 1061 Pfam E1-E2 ATPase 147 361 - -
Vra3g0365 1061 SFLD C1.7: P-type atpase like 362 783 - -
Vra3g0365 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0365 Vra-Chr3 4367247 4373728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0365 1 1061 Primary Pumps ATPases(2) AT1G07670 79.774 0.0 1731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0365 K01537 - gmx:100788807 1988