Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0358 ATGAGAAAGCTGTGTTTTAACCCCAAGACGGCGTCGTTTGCCTTGGCCCGCAATTCTCCTTCTTCGCCACAATCTTTAATCTCAAGCCCTACACCGCCCAGGCTCAGCTTTTCAGAACCTGGCAGCGTCGTCGACGAAGATACCTTCATGGAGGAAGCAGAGGCAATCATACTCAAATGGAACCCTGACTCCTCGGCCTACGCCAAAGTCACTTCCCTATTTTATGAAGACAAAACAGAAGCCAAACACTACATTAACTGCGTTAACCAGCTTCACCAAACCATGCATTCCTTGATCTCTCACAGCCCTTCCTCTCATAAACTCGTCCTCGCTCACAACCTAATGCAGATCGCCATGAAAAGACTCAAGAAAGAGTTCTACCAGATCTTATGCATGAACCGCGCTCACCTTGATCCCGAATCGGTCTCCGCCAGATCCTCTCGCACCTCCGCCAATTCTAGTTCCTCCGATTGCGACGATGACTTCGCGGCCGAAGACGACGATATCCGTGCCGCCGGCGACTCTATCACCGAAGTCGAGCAGGTTTCCTCAGGCGCCATGGCGGATCTGAAATTAATTGCCGACTGCATGGTCTCTTCCGGCTACGCAAAGGAGTGCGTCAGCGTTTACATCATCATCCGAAAATCCATAATTGACGAAGGAATTTATCGCCTCGGTGTTGAGAAACTGAGCTCGTCGCGCGCTAACAAGATGGATTGGGAAGTGCTTGATTTGAAAATCAAGAGTTGGTTGGAGGCGGTGAGGATTGCCGTTAGAACGCTGTTTAACGGAGAGAGAATCCTCTGCGACAACGTCTTCAGTTACTCGGATTCCGTAAGAGAATCCTGCTTCGCCGAGATTTCCAGAGACGGCGCCTCTCTCCTTTTCGGATTCCCCGAACTCGTCGTCAAAACAAAGAAATCGTCGCCGGAGAAGCTGTTCCGCGTGCTCGACATGTACGCTGTGGCTTCAGAACTGTTGCCAGAGATCGAGTCCATATTTTCCTCCGATTACAACTCCGCCGTGCGTTCTCAGGTCCTCACTTCACTTCAACGACTCACCGAGTCTGCGCAATTCTTGCTCACCGAGTTCGAGTCCACGATGCTAAAAGACTCTTGCAAGACTGCAGTGAACGGCGGCGGCGTGCACTCGCTCACGATTCAGACAATGAATTATCTCGCAATCCTCGCAGATTACGTCAACGTTCTCTCTGACATATTCCCGCGCGAGTGGCTTCCTCTGCCGAAGTCTTCTTCGCTGCCGGAGTCTTATTTATACAGTCCAGAGTCTGATTACTCAGCGTCGACGCCGGCGCTGACGGTGCGCATGGCGTGGCTGATTCTCGTCCTCCTTTGCAAGCTCGATGGCAAAGCGAAGCATTGCAAGGACGTTTCACTATCTTACTTGTTTCTCGGGAACAATCTCTGGTACGTGGTGGCCAGAGTCCGAAGCTCGAACCTGCAGTACGTGCTTGGCGACGATTGGATTACAAAGCACGAAGCTAAAGCGAAGAGGTTTGTGGCGAACTACGAGAAGATAGCTTGGGGAGAAGTGGTTTCATCGCTGCCGGAAAATCCGGCCGCAGCGGAGGCGAGGGCGGTGTTCGAGAACTTCAACCTCAAATTCGAGGAAGCATATCGGAAGCAGAACTCGTTTGTGGTAGCTGATAGAGAGCTGCGAGACGAAATAAAAGGTTCGATCGCGAGAAGTATTGTGCCGAGATATCGTGAGTGGTATAATGCGCTGCTTGCTTCGGTGGGATCAGTGAGGGACTTGACGGTGACGGAGATTGTGACGTTTACCCCACAAGACATTGAAAATTATCTCGCTAACCTCTTCTTTTTTGGAACGTCATCCAGTTCTGTATCCTCCTCGTCGGTAACTTCGTCCCCTCTCCGGCGTTGGAGTTGA 1911 0.5133 MRKLCFNPKTASFALARNSPSSPQSLISSPTPPRLSFSEPGSVVDEDTFMEEAEAIILKWNPDSSAYAKVTSLFYEDKTEAKHYINCVNQLHQTMHSLISHSPSSHKLVLAHNLMQIAMKRLKKEFYQILCMNRAHLDPESVSARSSRTSANSSSSDCDDDFAAEDDDIRAAGDSITEVEQVSSGAMADLKLIADCMVSSGYAKECVSVYIIIRKSIIDEGIYRLGVEKLSSSRANKMDWEVLDLKIKSWLEAVRIAVRTLFNGERILCDNVFSYSDSVRESCFAEISRDGASLLFGFPELVVKTKKSSPEKLFRVLDMYAVASELLPEIESIFSSDYNSAVRSQVLTSLQRLTESAQFLLTEFESTMLKDSCKTAVNGGGVHSLTIQTMNYLAILADYVNVLSDIFPREWLPLPKSSSLPESYLYSPESDYSASTPALTVRMAWLILVLLCKLDGKAKHCKDVSLSYLFLGNNLWYVVARVRSSNLQYVLGDDWITKHEAKAKRFVANYEKIAWGEVVSSLPENPAAAEARAVFENFNLKFEEAYRKQNSFVVADRELRDEIKGSIARSIVPRYREWYNALLASVGSVRDLTVTEIVTFTPQDIENYLANLFFFGTSSSSVSSSSVTSSPLRRWS* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0358 636 MobiDBLite consensus disorder prediction 17 40 - -
Vra3g0358 636 Pfam Exo70 exocyst complex subunit 248 610 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vra3g0358 636 MobiDBLite consensus disorder prediction 17 36 - -
Vra3g0358 636 MobiDBLite consensus disorder prediction 142 158 - -
Vra3g0358 636 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 622 - -
Vra3g0358 636 SUPERFAMILY Cullin repeat-like 48 613 IPR016159 -
Vra3g0358 636 MobiDBLite consensus disorder prediction 142 161 - -
Vra3g0358 636 Gene3D Exocyst complex component Exo70 64 621 - -
Vra3g0358 636 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 622 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0358 Vra-Chr3 4300271 4302568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0358 50 613 EXO70 exocyst subunit family AT3G09520 54.783 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0358 K07195 - gmx:100810548 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0358 3 4300271 4302568 Vra8g0583 8 9029213 9051339 PCT
Vra8g0955 8 21280448 21282235 Vra3g0358 3 4300271 4302568 PCT