Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0356 ATGAGCACGTGTCGTGTAGCATGGACGGAGCATCACACTCCTATTCTACTCTTAGTAGTTCCCCGCGCAGAGGGAAGCAAGCAGGTTCATAGACGTAGAAAAATTCAGAGTCTTCCCTCTGATTCTGGTTCTTGCAGTGATGGGGTTGCGGATGAAGATTCAGGATCATTTCAATTGGGGTTCGGGTCCTCGAAGCAACCGTTTGGAACTCCCATGAAGAAGCTATTAGCTGAAGAACTGTCCCGAGAAACTGAACCCAAAAGAAGAGCTCCCGGTGTCATAGGCAGATTAATGGGTCTTGATGGACTTCCGTTGCAATTGCCTGCCAATAAGCATCACAAGCATGTGTCAGAAAATAATGTGAAAGGGACAACACCGGCAGCGAAAACTCGAAGCAGTGGTAAACTATACGGCAGTCGAACATCTGGAAGAAGTTCAAAGAATCAACAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCTCAAACATAGAGGGTTGTAGGTATTCGTCCCAGGGGTCTGTAAAGTTGAAGGTCACTGATGATGAAATGTCATTTGTTGAACAGAAATTCATGGATGCCAAACTCCGTGCAACTTATCAGGATTTACCGTCTTCCCAGGATTCCCATGATACACTCGAGATTCTAGACTCTAACAATGATCTTTTGCAAAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAGGCATCTAGATGATCTGCAAGGTTCCCCTTCCGAATCACATTTTGATCACATCAAAGGTACCAAATCATCAGATATAGAAAACTATGAACATGGTGACTTAAGCCCGAAGCCGGGTAGGGAGATAAAAGGGTTGAATTACAATAGATCTCATCAGAAGCATCGTGATGGTTATTCTTCCCATGTAATCAGAAGACAGGATACTCATAGTTCGCCAAAATCATCAAAGCTTCAGTTTCGGGGAAGAAGTGAGCCTGATGCAGTCCCAACAAGGATTGTTATCCTAAAACCTAATCTTGGAAAAGTGCAGAAAGCTACCAAAATTGGTTCATCACCTTGTTCTTCACATACTTCTCTGTTGGACTATGGAAGGTATCCTAAATTTTCAGATAGCAGATTTAGGGACACTGAACTGAATCAAAGAATAAATTTGCCTGATAATGCCTGGCATTCAAGGCAAAATTCTTTGGAATCAAGAGAAATTGCAAAGGAAATCACAAGCCAAATGAAAAATAATTTGAGTAATGGCTCCATGTTATTATCAACTTCTACATTTAGAGGAAACACGTGGCACAATGGCTCATGTAGTTTTTCTGGGAATGAATCTCTTGAGGAATCAGAGGTGACACCTGCAACTTTTGGAAACCCATTTTACGTAAGTAATACTATCAGCCCATCATCATGTTTTAGTGAATCATTTGTGAGTAAAGAGGCAAAGAAGAGATTGTCAGAGAGGTGGAAAATGTCACTCAAGTCTCAGCAGGGTCATTCTGTATCCAGGAGTGGCACACTAGCTGAAATGCTTGCGACCCCTGATAAGGAAATGAAAACAGCTAATTTTGACAGCAGCCCTAGTGGGGGTTTACGTGATAAAGTTTCTAGCAATGGTAAACCTGCTGGGTGGGTTGAACCATTGGGTATTAGCAGTAGGGATGGATGGAAGGATGGATGTATTGGAAGTTTACCGAGGTCTAAGTCTCTTCCTGCTTCATCTACTACTTCCTTAGGAAGTCCTAGAACAATTTTGTGCCATGAAGCTCTTCACGATGATCGATTTATGGTGCCAAAGGTAGCCTCTAAACGGGAAAGGAAGAAAGTGGTGAAATGTCTTGAACAGAGACAGTGTATGAATACGAGAAACCTAAAAAGCAAGAAGTCTCGGTGTTCTCATCCATCAAATCTAGAAGGCAATGAGTCATCCCCAGACTTGAATACAATTCAAAATAAAGTGAGGCTTAATCTTGAAGAGGATTTGCCGAAGCAAGAAATGTTGGCCGCTGAATCATTGGCTGAGATGGATGGAGAAACTATTGCAGTTACTGAAGCTATTGTGAATGTGGCAGATGAAAATGCAGTTGTTTCATCTGAATCTTATATTAAGGATTTATCAGTTGGGTCTTCCGCTAAAAATTCTGTCCCCTTGCAAACACCTGTATCTGGACTTGAATCTTCATGCTGTAAAGATGCGGATCAACCCAGTCCAGTCTCAGTGCTAGAACCTTCTTTTACTGATGATCTGTCATCATGTTCCGAGTGTTTTGAAAGTCTCAGTGTTGACATACAAGGGCTTCGAATGCAACTTCAGTTGCTGAAGCTAGAATCTGAAGAATTTGAAGGATCCGTGCTAATTCAAAGTGATGAAGATGGTGGGGAAGCATACACAGGAATTTCAGAAGACAATGGATTACTTGATGGAGATAGCTGGGAGTCTTCCTACATGATTGATGTCTTGTCTGAATCTGGAATTGATAGAGCTTTACCTGATGCATTTTTGGAAGTTTGGCATTCTCTTGAATGCCCTGTTAGTCTTTCAGTGTTTGATGAGCTTGAAAAGAAGTATTCTGATTGGAGTACTTGCCCACGGTCCGAAAGGAGATTGCTTTTTGATCGTATAAATTGGGGAATTATCGACATATACGATCAATTTGTTAGGGCACAATCATGGGTAATCCCTTCGAGAGCCACAAATATTTGTTCTAGTTCGAAATTGATTAAAAGTGGACTCCAAGACTGTTTGTACAAGATGCTGTGGAGTCAGGGAAAAGTAAAGGATACGACACTGGGGAAGGTGTTGGTTAGTGAATTGCAGTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGCAAAGTTGAGAGCTTGCTACTTGATGATCTAGTGGCAGAGATAGCTGTTACATAG 2886 0.4151 MSTCRVAWTEHHTPILLLVVPRAEGSKQVHRRRKIQSLPSDSGSCSDGVADEDSGSFQLGFGSSKQPFGTPMKKLLAEELSRETEPKRRAPGVIGRLMGLDGLPLQLPANKHHKHVSENNVKGTTPAAKTRSSGKLYGSRTSGRSSKNQQEFKDVFEVSEISNIEGCRYSSQGSVKLKVTDDEMSFVEQKFMDAKLRATYQDLPSSQDSHDTLEILDSNNDLLQKYFKRPDSLFKRHLDDLQGSPSESHFDHIKGTKSSDIENYEHGDLSPKPGREIKGLNYNRSHQKHRDGYSSHVIRRQDTHSSPKSSKLQFRGRSEPDAVPTRIVILKPNLGKVQKATKIGSSPCSSHTSLLDYGRYPKFSDSRFRDTELNQRINLPDNAWHSRQNSLESREIAKEITSQMKNNLSNGSMLLSTSTFRGNTWHNGSCSFSGNESLEESEVTPATFGNPFYVSNTISPSSCFSESFVSKEAKKRLSERWKMSLKSQQGHSVSRSGTLAEMLATPDKEMKTANFDSSPSGGLRDKVSSNGKPAGWVEPLGISSRDGWKDGCIGSLPRSKSLPASSTTSLGSPRTILCHEALHDDRFMVPKVASKRERKKVVKCLEQRQCMNTRNLKSKKSRCSHPSNLEGNESSPDLNTIQNKVRLNLEEDLPKQEMLAAESLAEMDGETIAVTEAIVNVADENAVVSSESYIKDLSVGSSAKNSVPLQTPVSGLESSCCKDADQPSPVSVLEPSFTDDLSSCSECFESLSVDIQGLRMQLQLLKLESEEFEGSVLIQSDEDGGEAYTGISEDNGLLDGDSWESSYMIDVLSESGIDRALPDAFLEVWHSLECPVSLSVFDELEKKYSDWSTCPRSERRLLFDRINWGIIDIYDQFVRAQSWVIPSRATNICSSSKLIKSGLQDCLYKMLWSQGKVKDTTLGKVLVSELQWLNLRDDIDGIGSKVESLLLDDLVAEIAVT* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0356 961 MobiDBLite consensus disorder prediction 113 149 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 238 306 - -
Vra3g0356 961 Pfam Domain of unknown function (DUF4378) 805 957 IPR025486 -
Vra3g0356 961 Pfam Protein of unknown function (DUF3741) 188 232 IPR022212 -
Vra3g0356 961 MobiDBLite consensus disorder prediction 512 535 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 625 639 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 120 149 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 616 639 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 238 320 - -
Vra3g0356 961 MobiDBLite consensus disorder prediction 30 51 - -
Vra3g0356 961 PANTHER AFADIN 23 959 - -
Vra3g0356 961 Pfam DUF761-associated sequence motif 84 104 IPR032795 -
Vra3g0356 961 PANTHER AFADIN 23 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0356 Vra-Chr3 4274269 4280265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0356 67 960 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 35.167 7.68e-127 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0356 - - pvu:PHAVU_001G171300g 1604.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0356 3 4274269 4280265 Vra8g0950 8 21103402 21108863 PCT