Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0352 ATGGTAGCAATGAAGAGACAACGTGGTAACGAAGGATCGGAGAACTTAGATTTGGCAAAGTGTCTTATGCTGTTCTCTTGTCCTGAAGAAAGCAACAAAGCGCAAGAGAAAGGTTTTGGATCTCTGGAATTTGAGTGCAAGACGTGCAACCGCAGGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGTTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGTATCAGCAACGAAGGCTTTGTTCCTATTCCTTCCATCGACCAAGTTATTGCGAAATTCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTACGTGCTTGGACTTGGAGTTACACCTGTAG 468 0.4722 MVAMKRQRGNEGSENLDLAKCLMLFSCPEESNKAQEKGFGSLEFECKTCNRRFSSFQALGGHRASHKRQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGISNEGFVPIPSIDQVIAKFPVLKRSNSTRVTCLDLELHL* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0352 155 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 155 - -
Vra3g0352 155 PANTHER ZINC FINGER PROTEIN ZAT5 4 155 - -
Vra3g0352 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vra3g0352 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vra3g0352 155 SMART c2h2final6 44 66 IPR013087 -
Vra3g0352 155 SMART c2h2final6 92 114 IPR013087 -
Vra3g0352 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vra3g0352 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vra3g0352 155 Gene3D Classic Zinc Finger 42 114 - -
Vra3g0352 155 Pfam C2H2-type zinc finger 92 116 - -
Vra3g0352 155 Pfam C2H2-type zinc finger 44 69 - -
Vra3g0352 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0352 Vra-Chr3 4218785 4219466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0352 4 153 C2H2 Transcription Factor Family AT2G37430 45.342 6.51e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0352 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0352 - - pvu:PHAVU_001G170800g 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0352 3 4218785 4219466 Vra8g0969 8 21686459 21687314 PCT