Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra3g0352 | ATGGTAGCAATGAAGAGACAACGTGGTAACGAAGGATCGGAGAACTTAGATTTGGCAAAGTGTCTTATGCTGTTCTCTTGTCCTGAAGAAAGCAACAAAGCGCAAGAGAAAGGTTTTGGATCTCTGGAATTTGAGTGCAAGACGTGCAACCGCAGGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGTTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGTATCAGCAACGAAGGCTTTGTTCCTATTCCTTCCATCGACCAAGTTATTGCGAAATTCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTACGTGCTTGGACTTGGAGTTACACCTGTAG | 468 | 0.4722 | MVAMKRQRGNEGSENLDLAKCLMLFSCPEESNKAQEKGFGSLEFECKTCNRRFSSFQALGGHRASHKRQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGISNEGFVPIPSIDQVIAKFPVLKRSNSTRVTCLDLELHL* | 156 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra3g0352 | 155 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 4 | 155 | - | - | |
Vra3g0352 | 155 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 4 | 155 | - | - | |
Vra3g0352 | 155 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 119 | IPR013087 | - | |
Vra3g0352 | 155 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
Vra3g0352 | 155 | SMART | c2h2final6 | 44 | 66 | IPR013087 | - | |
Vra3g0352 | 155 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
Vra3g0352 | 155 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 44 | 71 | IPR013087 | - | |
Vra3g0352 | 155 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 46 | 66 | IPR013087 | - | |
Vra3g0352 | 155 | Gene3D | Classic Zinc Finger | 42 | 114 | - | - | |
Vra3g0352 | 155 | Pfam | C2H2-type zinc finger | 92 | 116 | - | - | |
Vra3g0352 | 155 | Pfam | C2H2-type zinc finger | 44 | 69 | - | - | |
Vra3g0352 | 155 | SUPERFAMILY | beta-beta-alpha zinc fingers | 44 | 114 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra3g0352 | Vra-Chr3 | 4218785 | 4219466 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra3g0352 | 4 | 153 | C2H2 Transcription Factor Family | AT2G37430 | 45.342 | 6.51e-35 | 118 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra3g0352 | zf-C2H2_6 | 1.4e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra3g0352 | - | - | pvu:PHAVU_001G170800g | 300.827 |