Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0351 ATGAATATGAAGAGACAGAGAGAAACTGAGGGGTTTGCAACGATTGATTTGGCAAATTGTCTAATGCTTCTATCATGCCCCCAACAAAATAAGTTACAGAGAAAACATGTTGAGGATGTGGAATTTGAGTGCAAGACATGCAAGCGAAAGTTCTCGTCTTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACAGCCTATAGGTCTAAGTTTGGGAATTAAGAAACCCAAAATGCACGAGTGTACCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGAGGCCACATGAGAAGACACAGAGCTTCCATTAATGGAGATTTTTCTTCAGTTAAGTATGTTGCACAAGTACCCATTTTGAAAAGATCAAATAGCACGAGGGGTATGTGCATGGACTTGAACCTAACACCCTTAGAGAATGACTTCAATTTATTGTTTGGAAAAACCTCACTCAATGCTGGTGCCTTAGTCTGA 513 0.4133 MNMKRQRETEGFATIDLANCLMLLSCPQQNKLQRKHVEDVEFECKTCKRKFSSFQALGGHRASHKRSKLEGDELKAQPIGLSLGIKKPKMHECTICGQEFSLGQALGGHMRRHRASINGDFSSVKYVAQVPILKRSNSTRGMCMDLNLTPLENDFNLLFGKTSLNAGALV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0351 170 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vra3g0351 170 SUPERFAMILY beta-beta-alpha zinc fingers 42 113 IPR036236 -
Vra3g0351 170 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vra3g0351 170 Gene3D Classic Zinc Finger 39 113 - -
Vra3g0351 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vra3g0351 170 SMART c2h2final6 91 113 IPR013087 -
Vra3g0351 170 SMART c2h2final6 42 64 IPR013087 -
Vra3g0351 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vra3g0351 170 PANTHER ZINC FINGER PROTEIN ZAT5 3 163 - -
Vra3g0351 170 Pfam C2H2-type zinc finger 91 115 - -
Vra3g0351 170 Pfam C2H2-type zinc finger 42 66 - -
Vra3g0351 170 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0351 Vra-Chr3 4213683 4214314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0351 3 162 C2H2 Transcription Factor Family AT2G37430 47.059 2.56e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0351 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0351 - - gmx:100806997 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0351 3 4213683 4214314 Vra3g0351 3 4213683 4214314 ECH