Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0345 ATGGCTTTGATGTCTGGACTTCAGCGTCTCCTTCGCCAATCCCCACTTCTTCATTCGCACCATGCTTCCATTCGTTTAGCCTCAACTCTTACCTCCCCCAAACTTTTCGTCAGCGGTCTCTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCATTCGGGCAGCTGGTGGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTAACCTATACAACCATAGAAGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACGGTCCCAACCCTCTGAATCAGGTTTCACTGTTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.4476 MALMSGLQRLLRQSPLLHSHHASIRLASTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSRSQPSESGFTVNKTVGWCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0345 139 MobiDBLite consensus disorder prediction 109 139 - -
Vra3g0345 139 Gene3D - 21 133 IPR012677 -
Vra3g0345 139 SUPERFAMILY RNA-binding domain, RBD 31 131 IPR035979 GO:0003676
Vra3g0345 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Vra3g0345 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Vra3g0345 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Vra3g0345 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Vra3g0345 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0345 Vra-Chr3 4108678 4111177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0345 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 9.84e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0345 - - gmx:100306326 239.965