Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0344 | ATGACGTCGTTCTTAAAGCCCGAGAATGCTCTCAAAAGGGCGGAAGAGTTAATCAATGTTGGGCAGAAGCAGGATGCTCTACAGACTCTTCATGACCTCATTACCTCAAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTTAAGTATGTTGAACTTTGTGTTGACATGCGCAAAGGCCGGTTTGCAAAAGATGGGCTTATTCAGTATAGAATTATATGTCAACAAGTTAATGTTAGTTCACTGGAGGAGGTGATCAAACACTTTATGCACCTGTCAACTGAGAAAGCTGAACAAGCTCGGAGTCAAGCACAAGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGTTGAGTTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTCACCCCATGGTTTAAATTTCTTTGGGAAACTTACAGGACAGTGCTTGAGATATTGCGGAACAATTCAAAACTGGAAGCATTATACGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCAGACTGTGTGAAATCATCAGAAATCATTTGGCTAATCTCAACAAATACCGTGACCAACGAGACAGGCCTGACCTTTCGGCTCCTGAAAGCTTACAACTGTATCTTGATACTAGAGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTAGAGGATATTCATGGACTGATGTGCCTGGTCAAGAAAACTCCCAAGCCATCCTTGATGGTTGTTTACTATGTGAAACTGACAGAAATATTTTGGATATCGTCAAGTCATCTTTATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGTTTCAATAAGAATCTGAGTCAGAAGGATTTGCAACTAATAGCTTCATCCGTTGTTCTTGCTGCACTTTCAGTGCCTCCTCATGACCGAACACACGGTGCGTCTCATTTGGAATTGGAGCATGAAAAAGAGAGAAATTTGAGAATGGCCAATCTCATTGGCTTCAATCTTGAGAGTAAACCTGAAAGCAGAGAAATGCTCTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGAGTGATGTCTTGTGTGACTCAGGAAGTGAAAGATGTTTACCATCTTTTGGAACATGAATTTCATCCCTCAGATCTTGCATTAAAAGCGCTGCCCTTGATAACTAAAATCTCAAAGTTAGGGGGGAAGCTTTCTACAGCTTCTTCTGTTCCAGAAGTACAGTTGTCTCAATATGTCCCATCACTGGAAAGACTAGCTACCATGAGGTTGCTGCAGCAGGTGTCCAATGTTTATCAGACAATGAAGATTGAGACTTTATCTGGGATGATCCCGTTCTTTGACTTCTCTATAGTCGAAAAGATCGCCGTAGATGCTGTAAAGCAGAAGTTTGTATCGATGAAAGTTGATCACATGAAAAATGTTGTGATCTTTTCCAAAACGAGTCTCGAGTCAGATGGCTTAAGGGATCACTTGGCCAATTTTGCTGAACAATTAAATAAGGCCCGACAAATGATTTGTCCTCCTGATAGGAAACCATCTAAACTTGGAGCTTTACTTCCAACTTTGACAGAGGTTGTTGCCAAAGAACACAAGAGGCTTCTTGCCCGAAAATCAATCATTGAGAAGCGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGAGAGGAGGAGTCAAAAAGACTAAGACTTCAGAAAATAACTGAAGAAGCAGAACAAAGACGGCTTGCCACTGAGTATGAGCAGAGGAAAAATCAGAGGATCCTCAGGGAGATAGAAGAGAGGGAAATTGAAGAAGCCCAAGCTTTACTTCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATCATAGAGGGAGACAAAATGACCAAGCAGACCTTGATGGAGTTAACTTTGACTGAACAACTCCGGGAAAGACAGGAAATGGAAAAGAAGTTGCAGAAGTTAGCGAAAACAATGGATTATTTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTTATTGAAGCTGCGTATCAACAACGTTTAGTGGAAGAGAGGCTTCTTCACGAGCGTGAACAACAGCAAGAAGTTGAACTCAGCAAACAGAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGCTCGAATGATTGGCAATAAGGAGATATATCAGGTCCGAGTTGTTAGTCATCGCCAAGCAGAGTTTAATAGATTAAGAAGAGAACGGGAAGAGAGAATCTCTAGGATTTTGCAGTCAAGGAAACAGGAAAGGGAAAAGATGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAGGAGAGACAACAAAAGATGCGTGAGGAGGAGGAAGCACGGAAACGTGAAGAGGCGGAAAGGAGAAAGAAGGAAGAGGCTGAACGTTTAGCGAAACTGGCCGAGATAGCTGAAAAACAGAGGCAGAGAGAGCGGGAACTCGAAGAAAAGGAGAGACAAAGAAAAGAAGCATTGTTAGGCAGAGCTGTTGAACCAGCTCCTCCTGCGCGTCAATCGGAACCCGTAACAGCTCCTGCTGCAGCTGCAGCTGCTGCAGCTGCAGCTGCTGCAGCTCCAAACCCAGGGAAATACGTGCCTAAGTTCATGCGAGATAGAGCTGAAAGAACAGGCACTGCTCCTCCTCCGGAAACAGATCGCTGGGGTAACAGTAGCAGCAGGCCGGATGGTGACAGGTGGCGTGGTGATGATCGGCGAAGTAGTTATGTTAGTGGTGGAGGTTCGAGGTCATCATCTTCTTGGTCCAGGAATCCGCGTTGA | 2877 | 0.4373 | MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLESKPESREMLSRSSLLAELASKGVMSCVTQEVKDVYHLLEHEFHPSDLALKALPLITKISKLGGKLSTASSVPEVQLSQYVPSLERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSIVEKIAVDAVKQKFVSMKVDHMKNVVIFSKTSLESDGLRDHLANFAEQLNKARQMICPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKMTKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKQRHEGDLKEKERLARMIGNKEIYQVRVVSHRQAEFNRLRREREERISRILQSRKQEREKMRKLKYYLKLEEERQQKMREEEEARKREEAERRKKEEAERLAKLAEIAEKQRQRERELEEKERQRKEALLGRAVEPAPPARQSEPVTAPAAAAAAAAAAAAAPNPGKYVPKFMRDRAERTGTAPPPETDRWGNSSSRPDGDRWRGDDRRSSYVSGGGSRSSSSWSRNPR* | 959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0344 | 958 | MobiDBLite | consensus disorder prediction | 923 | 938 | - | - | |
| Vra3g0344 | 958 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
| Vra3g0344 | 958 | Pfam | PCI domain | 373 | 510 | IPR000717 | - | |
| Vra3g0344 | 958 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
| Vra3g0344 | 958 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 907 | IPR027512 | GO:0005852 | |
| Vra3g0344 | 958 | MobiDBLite | consensus disorder prediction | 942 | 958 | - | - | |
| Vra3g0344 | 958 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 907 | - | - | |
| Vra3g0344 | 958 | Coils | Coil | 615 | 649 | - | - | |
| Vra3g0344 | 958 | Gene3D | UVR domain | 217 | 268 | - | - | |
| Vra3g0344 | 958 | MobiDBLite | consensus disorder prediction | 803 | 859 | - | - | |
| Vra3g0344 | 958 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 939 | IPR027512 | GO:0005852 | |
| Vra3g0344 | 958 | Gene3D | - | 352 | 509 | - | - | |
| Vra3g0344 | 958 | Gene3D | - | 269 | 342 | - | - | |
| Vra3g0344 | 958 | Coils | Coil | 667 | 697 | - | - | |
| Vra3g0344 | 958 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
| Vra3g0344 | 958 | Coils | Coil | 561 | 602 | - | - | |
| Vra3g0344 | 958 | Coils | Coil | 93 | 120 | - | - | |
| Vra3g0344 | 958 | Coils | Coil | 796 | 857 | - | - | |
| Vra3g0344 | 958 | MobiDBLite | consensus disorder prediction | 803 | 958 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra3g0344 | 1 | 958 | Eukaryotic Initiation Factors Gene Family | AT4G11420 | 73.203 | 0.0 | 1338 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0344 | K03254 | - | gmx:100782598 | 1454.5 |