Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0340 ATGGCTTCGCGGCGCCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTAGACTGTTCCCAGAAGAATCCGCAATGGGCTTCGGTGTCTTACGGAGTATTTATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGGGTTCACATCTCCTTTGTTCGATCCGTTACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGACAAACTCAATGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGACGGTCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGAGCATCCGCTCCTCCGCCTCCAAGGGGAAGCCGCCCCTTTCCACCAGCAACAACGGCGGCTGGGATAATTGGGACACGGACGACGGGTTCGGATCGGCTCGGGGCGGCTCTGATCTGCGGCGGAACCAGTCCACCGGCGATGTCAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTGGAAGCCTCTGCTGCCAATAAGGAAGATTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCCCGACCGGAGGGGCTTCCGCCATCGCAGGGTGGCAAGTACGTCGGGTTCGGATCTAGCCCCGCCCCGAGCCAAAGGGCTAATCAGCAAAGCGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAAGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTAAATGTTGTCTCTCAGAAGACATCAGAGATTGGACATAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACGCAAAAGGTTGAGGAATACACTAGAGATAGCCCCAATTCGACATCTGAAAAACAAAATGAAGCTGATAAAAACGGTTTCTATCAGGAGTATAATCGAGAGAACAAAGGCTGGAATTCTTCTACCAGAGAAGGGCAACAGTCTACGGGTGGACAAACTAATTCTTATCATTCAAGCTCTTGGGATGATTGGGGCCACAAAGATCCTAGGAAGGAACATCCTGCTAAAGGATCGTCTCATCAGTCATCAGGTGGGCTATCCGATGCTTATAACACTAGCTCTTGGGATGATTGGGACCATGAAGACGCAAGGAAGAAAGAAGCAGCTAAAGGATCAGCTTCCAATAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGATTTGATGATTTCTATGGGAATGCATCTAATAATAAAGCTGCTGGTCATAATGATAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCACTAA 1461 0.5277 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKESIRSSASKGKPPLSTSNNGGWDNWDTDDGFGSARGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRAQLEASAANKEDFFARKRAENESRPEGLPPSQGGKYVGFGSSPAPSQRANQQSDYLSVVSQGFGKLSLVAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDSPNSTSEKQNEADKNGFYQEYNRENKGWNSSTREGQQSTGGQTNSYHSSSWDDWGHKDPRKEHPAKGSSHQSSGGLSDAYNTSSWDDWDHEDARKKEAAKGSASNSSDGWAGWDNAKDDGFDDFYGNASNNKAAGHNDKAGVAWTGGGFH* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0340 486 MobiDBLite consensus disorder prediction 214 248 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 404 419 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 359 386 - -
Vra3g0340 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 405 485 IPR044519 GO:0005096|GO:0016192
Vra3g0340 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 409 IPR044519 GO:0005096|GO:0016192
Vra3g0340 486 MobiDBLite consensus disorder prediction 420 437 - -
Vra3g0340 486 Pfam Putative GTPase activating protein for Arf 4 102 IPR001164 GO:0005096
Vra3g0340 486 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Vra3g0340 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 409 - -
Vra3g0340 486 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 405 485 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 332 351 - -
Vra3g0340 486 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Vra3g0340 486 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Vra3g0340 486 MobiDBLite consensus disorder prediction 134 150 - -
Vra3g0340 486 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Vra3g0340 486 MobiDBLite consensus disorder prediction 359 486 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 117 192 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 387 403 - -
Vra3g0340 486 CDD ArfGap_ArfGap1 2 116 - -
Vra3g0340 486 MobiDBLite consensus disorder prediction 332 348 - -
Vra3g0340 486 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Vra3g0340 486 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Vra3g0340 486 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0340 Vra-Chr3 4061559 4066546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0340 4 82 C2H2 Transcription Factor Family AT4G21160 51.250 7.31e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0340 K12492 - gmx:100778302 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0340 3 4061559 4066546 Vra3g0340 3 4061559 4066546 ECH
Vra3g0340 3 4061559 4066546 Vra8g0997 8 22548056 22552109 PCT