Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0339 ATGCCGTTGAACATAACATCCATCAAGACATCTTCTAATGGAGTGTGGCAAGGTGATAATCCTTTAGATTATGCCTTCCCACTCCTAATAGTTCAAATCACCTTAGTCCTCATCGTCACTCGCTCCCTCGCTTTACTTCTCAAACCTCTCCGACAACCCAAAGTCATTGCTGAGATTCTGGGTGGAGTTTTGCTGGGCCCATCGGTACTGGGAAGAAGCCAAAGTTATCTGCATCGTATATTCCCTAAATGGAGCACGCCAACGCTGGAATCGGTCGCAAGCATAGGTCTTCTTTTTTTCCTATTCCTCGTAGGTTTGGAGCTCGATCTCCATTCCATTCGTCGGAGCGGAAAAAGAGCCTTCAGCATCGCCGCCGTGGGGATCTCTCTTCCTTTCGTCTGCGGAATCGGCGTCGCCGTCATCCTCCGCAAAACAGTTAAAGGCGCAGATGAACCCGGCTTCGCGCAGTTCATCGTCTTCATGGGCGTGGCGCTTTCCATCACCGCATTCCCGGTGCTCGCCCGCATCCTGGCGGAGCTGAAGCTCCTTACCACGCGAGTGGGGGAGACCGCGATGGCGGCGGCGGCGTTCAATGACGTGGTCGCGTGGATTCTGCTCGCGTTGGCAGTGGCTTTGGCGGGGAATGGCAGTGGGTCCCAGAAGAGTCCTCTGATATCGGTGTGGGTTCTTCTCTCGGGGCTGGCGTTCGTGGTTTTGATGATGGTGGCTGTCCGACCGGTGATGGAGGTTGTAGCTAGAAGGGGCGAAAACGACGCCGCTGACGAGTTTTATGTTTGCTTGACGCTAGCGGGGGTGTTGGTGTCGGGGTTTATGACGGACCTGATCGGGATTCACTCCATATTCGGGGCCTTCGTGTTCGGGCTAACGATTCCGAAGGAGGGAAACTTCGCGAAGAAGCTAACAGAGAGAATCGAGGATTTTGTTTTAGGTTTGTTGCTCCCACTCTACTTTGCTTCTAGCGGTTTGAAAACCGACGTAACTACCATACGTGGCGCTTCGGCTTGGGGTCTTCTGGTTCTGGTCATAGCCACGGCTTGTGCTGGGAAGATTCTTGGGACCTTCGTGGTGGCCATGTTCTGCATGATCCCCGCCAGAGAATCGCTCACACTTGGCGTCCTCATGAACACCAAAGGCCTCGTTGAGCTTATCGTACTCAATATTGGAAAGGAAAAAAAGGTTTTAAATGATGAAATGTTTGCAATCTTAGTTCTTATGGCTTTGTTTACAACCTTCATCACAACGCCAATAGTAATGGCGATCTACAAACCAGCTCGAGGAAACTCAATGAAAGCCCGGCGAAAGCTGGGTGACAATTCTTCAAGGTCTGGAAAGGAAATGGTTGAGAAGTTCAGAGTCTTGGCCTGTCTCCATGGGCCAAGCAATATCCCTTCTGTCATCAATTTGATTGAATCAACTCGAAGCACGAAAAAGTCCTTCACAAAGTTGTTCATGATGCACCTTGTTGAGCTCACAGAGCGCTCATCCTCCATCATCATGGTTCAACGTGCTCGTAGAAATGGTTTCCCTTTCTTCAACCGCTCTCATCGTGACCAGTGGCATGACCGAATTGCAGGAGCCTTTCAAGCCTACACTCAACTAGGTCGAGTCATGGTTCGGTCCACAACTACTGTTTCTTCTCTCTCCACCATGCATGAGGACATTTGCCACGTGGCGGAGGAGAAAATGGTGACCATGATTATTTTGCCCTTCCACAAACAGTGGAGAACAGAAGTGAATGGGGACAACGAGAAATATCAAGTGGTAGAAAATGCAGGCCACGAATGGAGAGTGGTGAACCAAAAGGTACTTAAGAATGCACCTTGTTCAGTGGTCGTGCTTGTGGATCGTGGATATGGAAATTTGCCTGAAACTTCAACCCCAGATTCCATTGTTTATCAACGAGTGTGCATCATCTTCTTCGGTGGCCCAGACGATCGTGAGGCTCTAGAGTTGGGGAAGAAGATGCTTGAACACCCAACAGTTAAAATAAGTGTTGTGAGGTTTATGGAAAAGGGTGTGTTGGATGATAATAATATTGTGTTAAACTTCTCACCTGACAAAAACAAAGAGGATAGTTACAGCTTCTCCACAGCCAAAATGAATCGCCAGAAAGAAAAGGAGTTGGATGAGGAGGCAATTAAGCAGTTTCAAAGCAAGTTGAATGACATGGTGGAATACATTGAGAAGTTTAGTGAGGACGTTGTGGAAGACGTATTGATAATAGGAAAAAGTGGGGATTATGATCTGATAATTGTTGGAAAAGGTCGATTCCCATCGAATATGGTGGCTGGATTGGCAGAAAGAAAACCAGAACATGCTGAATTAGGTCCTATTGGAGATGTTTTATCTTCATCAGAACATGAGGTTTTGTCATCTGTATTGGTTATTCAACAACACGATGTGACATTGGTAGATGATGCTCCTATATACAAGGTCCATGATGAGTATGGCACAGTCAATAATGCTGATTCTTCTCATGGAGTAGGAATTTCAATTGCCAATGACAGTGCCGTGTAA 2538 0.4775 MPLNITSIKTSSNGVWQGDNPLDYAFPLLIVQITLVLIVTRSLALLLKPLRQPKVIAEILGGVLLGPSVLGRSQSYLHRIFPKWSTPTLESVASIGLLFFLFLVGLELDLHSIRRSGKRAFSIAAVGISLPFVCGIGVAVILRKTVKGADEPGFAQFIVFMGVALSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVVAWILLALAVALAGNGSGSQKSPLISVWVLLSGLAFVVLMMVAVRPVMEVVARRGENDAADEFYVCLTLAGVLVSGFMTDLIGIHSIFGAFVFGLTIPKEGNFAKKLTERIEDFVLGLLLPLYFASSGLKTDVTTIRGASAWGLLVLVIATACAGKILGTFVVAMFCMIPARESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEMFAILVLMALFTTFITTPIVMAIYKPARGNSMKARRKLGDNSSRSGKEMVEKFRVLACLHGPSNIPSVINLIESTRSTKKSFTKLFMMHLVELTERSSSIIMVQRARRNGFPFFNRSHRDQWHDRIAGAFQAYTQLGRVMVRSTTTVSSLSTMHEDICHVAEEKMVTMIILPFHKQWRTEVNGDNEKYQVVENAGHEWRVVNQKVLKNAPCSVVVLVDRGYGNLPETSTPDSIVYQRVCIIFFGGPDDREALELGKKMLEHPTVKISVVRFMEKGVLDDNNIVLNFSPDKNKEDSYSFSTAKMNRQKEKELDEEAIKQFQSKLNDMVEYIEKFSEDVVEDVLIIGKSGDYDLIIVGKGRFPSNMVAGLAERKPEHAELGPIGDVLSSSEHEVLSSVLVIQQHDVTLVDDAPIYKVHDEYGTVNNADSSHGVGISIANDSAV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0339 845 PANTHER CATION/H + ANTIPORTER 3 821 - -
Vra3g0339 845 Pfam Sodium/hydrogen exchanger family 36 423 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra3g0339 845 Gene3D - 484 782 - -
Vra3g0339 845 Gene3D - 28 435 IPR038770 -
Vra3g0339 845 PANTHER BNAC06G14930D PROTEIN 3 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0339 Vra-Chr3 4051238 4055937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0339 75 832 Antiporter Super Family AT3G53720 64.683 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0339 - - gmx:100798644 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0339 3 4051238 4055937 Vra3g0339 3 4051238 4055937 ECH