Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0336 ATGGCCGGAAAAGGTGAGGGTCCTGCTATCGGAATCGATCTTGGAACCACGTACTCTTGTGTCGGGGTCTGGCAACATGACCGCGTTGAAATCATTGCCAACGACCAAGGCAACAGAACGACGCCGTCTTACGTTGGATTCACCGACACCGAGCGTCTAATCGGTGACGCCGCCAAGAACCAAGTCGCCATGAACCCCATCAACACCGTCTTCGATGCAAAGAGGTTGATTGGTCGTAGATTCAGCGATGCCCCTGTTCAGAGTGATATCAAATTGTGGCCTTTTAAGGTTATTGCTGGTCCTGCAGATAAGCCAACTATTGTAGTTAACTACAAGGGCGAGGAGAAACAATTTGCTGCTGAGGAAATCTCTTCCATGGTGCTCATGAAGATGCGTGAAATTGCTGAGGCTTACCTGGGTTCTACAGTGAAGAATGCTGTCGTTACCGTCCCTGCTTACTTCAATGATTCTCAGCGTCAAGCCCAAGGATGCTGCGTTATTGCTGGTCTCAATGTCATGCGTATTATCAATGAGCCTACTGCAGCTGCCATTGCATATGGTCTTGATAAGAAAGCATCAAGTGTGGGTGAGAAGAACGTTTTGATCTTTGATCTTGGTGGTGGCACATTCGATGTTTCTTTACTTACTATCGAAGAGGGCATCTTTGAGGTGAAAGCCACAGCTGGTGACACCCATCTTGGAGGAGAGGATTTTGATAACAGGATGGTGAACCACTTTGTGCAAGAGTTTAAGAGGAAGAACAAGAAGGACATAAGTGGAAACCCCAGAGCACTTAGAAGGTTGAGGACTGCTTGTGAGAGGGCAAAGAGAACCTTGTCATCTACTGCTCAGACTACCATTGAAATTGATTCTCTATATGAGGGAATCGATTTCTACTCCACCATTACTCGTGCAAGATTTGAGGAGCTCAATATGGACCTCTTCAGAAAATGTATGGAACCAGTGGAGAAGTGTTTGAGGGATGCTAAGATGGACAAAAGAAGCGTGGACGATGTTGTCCTTGTTGGTGGTTCTACCAGAATTCCCAAGGTTCAGCAACTACTCCAGGACTTCTTTAATGGAAAGGAGCTGTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCGGCTGTCCAGGCTGCGATCTTAAGTGGTGAAGGCAATGAGAAGGTTCAAGATCTTCTCCTTCTCGATGTTACTCCTCTATCTCTTGGGTTGGAGACCGCCGGTGGTGTGATGACTGTCCTGATCCCTAGGAACACTACAATTCCGACAAAGAAAGAACAGGTGTTCTCAACTTACTCTGATAACCAGCCTGGTGTGTTGATCCAGGTCTTTGAAGGTGAGAGAGCAAGGACCAGAGATAACAATTTGTTGGGCAAATTTGAACTTTCTGGCATTCCTCCTGCTCCCAGGGGTGTTCCACAAATTACAGTGTGCTTTGACATAGATGCCAATGGTATCTTGAACGTCTCTGCTGAAGATAAAACCACTGGCCAGAAAAACAAGATCACTATCACCAATGACAAGGGTAGGTTGTCGAAGGAAGATATTGAGAAGATGGTTCAAGAGGCTGAGAAATACAAATCCGAGGATGAAGAGCATAAGAAGAAGGTCGAGGCCAAGAACGCCTTGGAAAATTACGCTTACAATATGAGGAACACTGTGAAGGATGACAAAATTGGTGGCAAACTGGATCCTGCTGACAAGAAAAAGATTGAGGATGCAATTGAGCAAGCTATCCAATGGTTGGACAGCAACCAGCTTGCAGAGGCAGATGAGTTTGAGGATAAAATGAAGGAATTGGAAAGCGTCTGCAATCCTATCATTGCCAAAATGTACCAGGGTGGTGCCGGTCCAGACATGGGCGGTGCTCCTCCAGCAGATGATGAATATACTCCTTCTGGTGGAAGTGGGGCTGGCCCCAAGATTGAGGAAGTCGACTAA 1953 0.4659 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDAPVQSDIKLWPFKVIAGPADKPTIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQAQGCCVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDDKIGGKLDPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESVCNPIIAKMYQGGAGPDMGGAPPADDEYTPSGGSGAGPKIEEVD* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0336 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 548 IPR029047 -
Vra3g0336 650 MobiDBLite consensus disorder prediction 616 650 - -
Vra3g0336 650 Coils Coil 520 540 - -
Vra3g0336 650 Gene3D Actin; Chain A, domain 4 234 317 - -
Vra3g0336 650 Gene3D - 10 383 - -
Vra3g0336 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra3g0336 650 CDD HSPA1-2_6-8-like_NBD 9 386 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 208 218 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 336 352 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 368 388 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 395 414 - -
Vra3g0336 650 PRINTS 70kDa heat shock protein signature 476 492 - -
Vra3g0336 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vra3g0336 650 Gene3D - 191 365 - -
Vra3g0336 650 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 627 - -
Vra3g0336 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vra3g0336 650 Pfam Hsp70 protein 9 617 IPR013126 GO:0005524|GO:0140662
Vra3g0336 650 Gene3D - 545 618 IPR029048 -
Vra3g0336 650 SUPERFAMILY Actin-like ATPase domain 8 190 IPR043129 -
Vra3g0336 650 Gene3D - 71 126 - -
Vra3g0336 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 627 IPR013126 GO:0005524|GO:0140662
Vra3g0336 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 390 544 IPR029047 -
Vra3g0336 650 SUPERFAMILY Actin-like ATPase domain 197 387 IPR043129 -
Vra3g0336 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 623 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0336 Vra-Chr3 4007148 4010053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0336 1 650 Calmodulin-binding Proteins AT3G12580 91.091 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0336 K03283 - gmx:100798307 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0336 3 4007148 4010053 Vra3g0336 3 4007148 4010053 ECH
Vra2g0612 2 4842701 4845490 Vra3g0336 3 4007148 4010053 ECH
Vra3g0336 3 4007148 4010053 Vra2g0612 2 4842701 4845490 ECH
Vra3g0336 3 4007148 4010053 Vra8g0998 8 22588110 22591174 PCT