Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0332 ATGACCAATCACAATCACTCTGTTCCAGATTTCGATATTCAAATGGACGACAACAACCAATACCCCATTCTCACACCTTCAGGATTACCTCGCCAAAACAAACCCTTTATTGCAGAGGACGACGTCATGGAGCTGCTATGGCATAACGGCCAGGTTGTGATGCAGAGTCAGAACCATCGTTCTCTCAGAAAACCGATGCCGCCGCCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCTTCCGAGGCCAGAGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTACACTATCCAATCGACGACGACGACGACGTACCTCCGTTGGATCAGGCTTTTTGCGCCGATTTCCTCTACTCCCCTCCCACCGTTAACAACAGCACCGCCATGCAAACTCTCGCCACGTCTCAGCTTACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGGGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCTCGAGGCACAACACGAGAGCCGCCGAGGAGAGCGTGAAGGCAGCAGCGAAGGAATCCACAGTGGTGGATTCTTGCGAGACGCCGGCGGCAACGGCAGCGGCAGTTTCGAGAGTTTCGGAAACTGTGAGGAACGCGTCGGAACCGAGGGAAGGAGGCGCCGGCGGTCCGGTGCCTTCGACGAGTGCCGGTAACGGAAGGAGCACGATGATGTGCGACGTGACTATGGCGTCGTCGCCGGGCACTTCGAGTAGTAGCGGGGAGCCAGTTCAGGTGGCGCCGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGATTCTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCTGCAGCAACAGCAGCGGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTTCTCCCGATTCATCCAGAATGCAAGCAGAAAATCAGTCAGATAAAAATATGGTTGCAGCTGGTCCACCTGATCCAAACCAGTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCCTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAATCAAATGTTGGCAAGCCCAGTACCAGTAGGGATAATCCAGAAAACCGTTAG 1560 0.5263 MTNHNHSVPDFDIQMDDNNQYPILTPSGLPRQNKPFIAEDDVMELLWHNGQVVMQSQNHRSLRKPMPPPRNSHDASAAGPSEAREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPGRLEPKTPNFAYFSRHNTRAAEESVKAAAKESTVVDSCETPAATAAAVSRVSETVRNASEPREGGAGGPVPSTSAGNGRSTMMCDVTMASSPGTSSSSGEPVQVAPAEERKRKGREAEEWDSQSEDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPSPDSSRMQAENQSDKNMVAAGPPDPNQSRLPNFTDPYQQYPGPHQMQFQVIQNQAMNQSNVGKPSTSRDNPENR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0332 519 MobiDBLite consensus disorder prediction 434 519 - -
Vra3g0332 519 MobiDBLite consensus disorder prediction 56 82 - -
Vra3g0332 519 Gene3D - 309 372 IPR036638 GO:0046983
Vra3g0332 519 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 514 IPR031066 -
Vra3g0332 519 MobiDBLite consensus disorder prediction 156 170 - -
Vra3g0332 519 MobiDBLite consensus disorder prediction 213 322 - -
Vra3g0332 519 MobiDBLite consensus disorder prediction 272 287 - -
Vra3g0332 519 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 514 - -
Vra3g0332 519 SMART finulus 320 369 IPR011598 GO:0046983
Vra3g0332 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 380 IPR036638 GO:0046983
Vra3g0332 519 MobiDBLite consensus disorder prediction 240 269 - -
Vra3g0332 519 CDD bHLH_AtPIF_like 314 377 - -
Vra3g0332 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Vra3g0332 519 MobiDBLite consensus disorder prediction 472 513 - -
Vra3g0332 519 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Vra3g0332 519 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0332 Vra-Chr3 3972753 3977917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0332 5 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.316 8.36e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0332 HLH 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0332 - - gmx:100797225 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0332 3 3972753 3977917 Vra3g0332 3 3972753 3977917 ECH