Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0331 ATGGCACGTAGAAACTTTGGGAGCCAGATAACAGCACTTGTTGTAGATGACAATGTACTGAACAGAAGGATTCATGAAAAGCTGTTGGAGAGTGCTGGAGTGAGAAATCATGAGGGAGTGGAAAACGGGAAAGTAGCAGTGGATATTCATTGCCATGGACGAAGATTCGACCTCATTCTCATGGACATGGACATGCCAATAATGAATGGCATTCAGGCAACAAAGGAACTTCGTTCCATGGGCATTGGGAGCATGATCGTTGGTGTCTCATCACGTTCTACGGAAACAGAAATACGAAAATTTATGGAATCAGGCTTGAATGACTACCATGAGAAACCATTGAACACTGCAAAGCTTAATTCAATTCTTGATAAGATGAACCCTAATTTTATTAATAAATGA 402 0.408 MARRNFGSQITALVVDDNVLNRRIHEKLLESAGVRNHEGVENGKVAVDIHCHGRRFDLILMDMDMPIMNGIQATKELRSMGIGSMIVGVSSRSTETEIRKFMESGLNDYHEKPLNTAKLNSILDKMNPNFINK* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0331 133 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Vra3g0331 133 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Vra3g0331 133 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Vra3g0331 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 4 129 - -
Vra3g0331 133 SMART REC_2 10 123 IPR001789 GO:0000160
Vra3g0331 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 129 - -
Vra3g0331 133 Gene3D - 2 129 - -
Vra3g0331 133 SUPERFAMILY CheY-like 8 126 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0331 Vra-Chr3 3954702 3955257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0331 10 123 Response Regulator Gene Family AT3G04280 47.414 7.78e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra3g0331 Response_reg 3.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0331 - - gmx:100794931 205.297