Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0326 ATGGCTGCTACTGCCAATCCTATAGTTGGGTCCCAGATTTGGGTGGAGGATCCTGATCTGGCTTGGATAGATGGCGAGGTCTTGGAGATTAAAGGAGAAGTAATTAAAGTCCTTTGTTCTTCAGGGAAGACGGTTGTTGTTGAAACTTCCAGTATTTATCATAAAGATACTGAAGTTCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCACGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATTTTGATTGCTGTGAACCCTTTCATAAAGCTCCCTCATTTATATGACAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGCGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAATCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGCTACTCATGAGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGAAGGTAGAACTATCGAGCAAAAGGTCCTGGAGTCCAATCCTGTTTTAGAAGCCTTTGGCAATGCGAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATATCAGGGGCTGCTATCAGGACTTATCTGCTTGAAAGGTCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCTGAGGATGTTAAAAAATACAAATTAGGAGATCCAAGAACGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTAGATGGGCTTGATGAATCTAAGGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATTTTTAAAGTTGTCGCTGCAATTTTACATCTTGGGAACATCGAATTTAAGAAAGGGAAGGAGGTAGACTCGTCTTTGCCCAGAGATGAAAAATCTTGGTTCCATCTAGAGACTGCTGCTGAGCTTTTCATGTGTGATGTAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTAGAGATGAAACAATTACGAAATGGCTGGATCCAGAAGCTGCTGCACTCAGTCGAGATGCCTTGGCTAAGATTGTGTACTCAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATCGGGCAAGATCCTGAGTCAAAATCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAACAAAGATTATGTGGTTGCAGAGCACCAGGCACTTCTATGTGCTTCAAAATGCCCCTTTGTATCGGGTCTGTTTCCTCCTTCACCTGAGGAATCTTCAAAACAATCAAAGTTCTCCTCCATTGGCTCACGATTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTCAGTTCCACTGAGCCACATTACATTCGTTGTGTAAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGGTATCCTACAAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTAACTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGTTGTCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGCCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAGGTCAGCAAGCATTATTCAGAGAAAAGTTCGGTCATATTTGCAACGCCGAAGTTTCATATTGCTTCGTCTGTCGGCTTTGAGGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTGTATGAGGAAATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGATGCTTCCGCATGCATATTGCTAGGAAGGCATACAATGATTTGTATGCTACTGCTGTCACTGTCCAGACTGGTATGAGGGGAATGGCTGCACGTTGTGAGCTATACTTTAGAAGGAGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCAGAAATACTTGGCACAACTTCATTTCACCGAACTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCAAGAGTTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAAAACAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAAAAACGTTTGAGGGTTGACATGGAAGAAGCAAGAGCTCAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTTACTTCTTGAAAAGGAGAAAGAGGCTACAAAAATAGCAGCAGAGAGAGCTCCCGTTATACAGGAGATTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAAGTTCGAAGAGGCTAGCAAAATTGGTGAAGAAAGGTTAAAGCAAGCTTTGGATGCGGAATCAAAAGTAATCCAGTTGAAGACAGCTATGCAAAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCACTACTAAACTCATCTGTGAAAACAATAGCAGAACACCTGTCTTCCCCAGCGGACGAGAAATTAGGAAATGGTCACCATGTGGCAGAAGAGCTGAAAGCTGTTGATACATATGTTACGCCTGTGAAACAATTTGGTACAGAATCTGACTTCAAACTGAGGAGATCTTACATTGAACGACAACATGAGAGTGTTGATTCACTTGTTAACTGTGTTATGAAAAATATTGGCTTCAATCATGGAAAACCCATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCTTTTGAAGCTGAAAGAACCAGTGTATTTGATCGCCTGATTCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGCAATGATCATATGGCCTACTGGCTGTCGAATACATCTGCGTTACTGTTTTTACTTGAACAAAGTCTTAAATCTGGGAGTTCAACAAATGCTACCCCAGTTAGAAAACCACCTAATCCAACATCTCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATCCGATGTTGTGCGCAAGGTAGAAGCTAAGTACCCTGCCTTGCTTTTCAAGCAGCAGTTGACAGCGTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACTGCGGTCCTTGCATTATGCATCCAGGCACCAAGAACATCAAAGGGAGGGTTACGTTCTGGCCGATCCTTAGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTACTATTGAATCCCTAAATACCCTCCTCTGTACATTGAAAGAGAACTTTGTGCCACCAGTTCTTATTCAAAAGATCTTCAGTCAGACCTTCTCATATATTAATGTGCAACTTTTCAATAGTCTTCTTCTTCGACGTGATTGTTGTACATTCAGCAACGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGCTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCATGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTACAGGATTTCCTACGATGAAATCATCAACGATTTATGTCCCATCTTGAGTGTTCAACAGCTATACAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTGCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTTTTGTTGGATGACAGTTCTAGCATCCCCTTCTCAGTGGATGATCTTTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCAGCGGATGAGCTTCTTGAAAATCCAGCCTTCCAATTTTTGAACGACAACACTTGCATGTTGGTATATCCTATAATCTGA 4566 0.4071 MAATANPIVGSQIWVEDPDLAWIDGEVLEIKGEVIKVLCSSGKTVVVETSSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTIEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRTFHYLNQSNCFELDGLDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFKKGKEVDSSLPRDEKSWFHLETAAELFMCDVKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLCASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKRILKNVGLEGCQIGKTKVFLRAGQMAELDTRRSEILGRSASIIQRKVRSYLQRRSFILLRLSALRIQAACRGQLARQVYEEMRQEASSLVIQRCFRMHIARKAYNDLYATAVTVQTGMRGMAARCELYFRRRTKAAIVIQSHCQKYLAQLHFTELKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKSKLEKQVEDLTLRLQLEKRLRVDMEEARAQENQRLQSALQEMQLQFKETKLLLEKEKEATKIAAERAPVIQEIPVVDHALLEKLSSENEKLKNMVSSLEKKIDETEKKFEEASKIGEERLKQALDAESKVIQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPADEKLGNGHHVAEELKAVDTYVTPVKQFGTESDFKLRRSYIERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSTNATPVRKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTAVLALCIQAPRTSKGGLRSGRSLAKDSPMVHWQSTIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNDNTCMLVYPII* 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0326 1521 PANTHER MYOSIN 7 1509 - -
Vra3g0326 1521 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vra3g0326 1521 Coils Coil 972 1006 - -
Vra3g0326 1521 CDD MYSc_Myo11 76 720 IPR036018 -
Vra3g0326 1521 Gene3D - 833 882 - -
Vra3g0326 1521 Gene3D - 735 784 - -
Vra3g0326 1521 Gene3D - 785 832 - -
Vra3g0326 1521 ProSiteProfiles Dilute domain profile. 1156 1457 IPR002710 -
Vra3g0326 1521 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vra3g0326 1521 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Vra3g0326 1521 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 Coils Coil 891 950 - -
Vra3g0326 1521 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Vra3g0326 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 785 IPR027417 -
Vra3g0326 1521 SMART DIL_2 1332 1439 IPR002710 -
Vra3g0326 1521 Coils Coil 1014 1048 - -
Vra3g0326 1521 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 SMART iq_5 830 852 IPR000048 GO:0005515
Vra3g0326 1521 SMART iq_5 782 804 IPR000048 GO:0005515
Vra3g0326 1521 SMART iq_5 734 756 IPR000048 GO:0005515
Vra3g0326 1521 SMART iq_5 853 875 IPR000048 GO:0005515
Vra3g0326 1521 SMART iq_5 757 779 IPR000048 GO:0005515
Vra3g0326 1521 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 Gene3D - 439 623 - -
Vra3g0326 1521 Pfam Myosin N-terminal SH3-like domain 10 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 Gene3D - 666 733 - -
Vra3g0326 1521 Gene3D - 252 310 - -
Vra3g0326 1521 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra3g0326 1521 CDD MyosinXI_CBD 1107 1480 IPR037975 GO:0007015
Vra3g0326 1521 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vra3g0326 1521 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Vra3g0326 1521 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Vra3g0326 1521 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Vra3g0326 1521 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Vra3g0326 1521 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Vra3g0326 1521 PANTHER MYOSIN-14 7 1509 - -
Vra3g0326 1521 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vra3g0326 1521 Pfam DIL domain 1333 1435 IPR002710 -
Vra3g0326 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0326 Vra-Chr3 3830830 3849158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0326 1 1510 Myosins gene family AT5G43900 74.851 0.0 2346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0326 K10357 - gmx:100795648 2777.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0326 3 3830830 3849158 Vra3g0326 3 3830830 3849158 ECH
Vra3g0326 3 3830830 3849158 Vra8g1602 8 33054950 33069280 PCT
Vra8g1052 8 24485786 24507345 Vra3g0326 3 3830830 3849158 PCT