Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0323 ATGACTGTCGTTGCCGGACGCCCTACCGGAATCTCGCCGTTTGCCTCTCTCTCTCTCACCTTTCTTTCTCTTCCTGATGATGCTCAACGCTGGTGTCGACTGCGGCTAGAGAGAATGCCGGTGTCGGTCGTCTTCCTCTTTGCTTTTCTCAACTTGCTTTCCTCTTCCCAAGGTTCTTTGCATGCAGTGAAGTCGTTTTCTTTGAGTGTGTCGTTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGCTAAACCTTCTTTTGGACCTTCTTCTGCACCCATTCCATCTCCAAATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCATTATCATCACCGGCACCATCACAACATGAGACCTTATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCTTGTGACCAAATCTGCACTGAACCACTTACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAGGTTCGACTGACACTGGACGTAGCACCTTATGCCGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCGTTAGGCACGTATCTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACACTCAAAATCAGGGAAGAACTGTTGTTGATATTAATTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACCGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATTCAGGAATGCCATCTTCACCTCCATATGGATCTTTAGTTGGGAGTGGTCCCAGTCAAAGTGTTCAGGGCATTCTTCCGGTCAGTGCCAACTTTGTCGGCAGAAACCAGAAAATGAATGTCAGAACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTAGTGGGAGCGTTTTCAATTATTTTGAAATGGAAGAAGAGTAGGAGACCATCGAATGCTGTTGGCCCTGCATTCACATCATCTTTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGCATTACTAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAGTTCAAAGCGAATACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTTCTAACAAGAGATAATCAGAATGGAGACCGTGAATTTATTGCAGAGGTTGAGATGCTTAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAACTTGTTCGCAATGGCAGTGTCGAGTCCCATCTGCATGGTGATGACAAGATAAAGGGGATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCATATCTTCACGAAGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACCCCCAAAGTTTCTGATTTTGGATTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCTCCCGAATATGCAATGACAGGGCACTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGGAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGCAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTACAGGCTCTTAAGTTAATATACAATGACACAGATGAGACTTGTGGAGATTGTTGTAGTCAAAAGGATTCCTCTGCTCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAGATATCGTTACCAATTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAACAAACTTTCCTTACATAGATTTACCGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTACTGGGTTTGA 2376 0.4428 MTVVAGRPTGISPFASLSLTFLSLPDDAQRWCRLRLERMPVSVVFLFAFLNLLSSSQGSLHAVKSFSLSVSFASSEQAKMWFAKPSFGPSSAPIPSPNHQGPYMTPRQRHHYHHRHHHNMRPYVVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELENEIALGTYLEQSQVKIMGATADTQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYSGMPSSPPYGSLVGSGPSQSVQGILPVSANFVGRNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWKKSRRPSNAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFSSKRILGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRNKLSLHRFTGSRSEHGGPSSKRNWNDGYWV* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0323 791 Gene3D Transferase(Phosphotransferase) domain 1 464 685 - -
Vra3g0323 791 MobiDBLite consensus disorder prediction 770 791 - -
Vra3g0323 791 Gene3D Phosphorylase Kinase; domain 1 359 463 - -
Vra3g0323 791 SUPERFAMILY Protein kinase-like (PK-like) 366 663 IPR011009 -
Vra3g0323 791 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Vra3g0323 791 CDD STKc_IRAK 394 663 - -
Vra3g0323 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vra3g0323 791 Pfam Protein tyrosine and serine/threonine kinase 391 660 IPR001245 GO:0004672|GO:0006468
Vra3g0323 791 PANTHER OS01G0750732 PROTEIN 46 788 - -
Vra3g0323 791 ProSiteProfiles Protein kinase domain profile. 388 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0323 791 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 46 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0323 Vra-Chr3 3794688 3801369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0323 138 780 Receptor kinase-like Gene Family AT5G56890 54.299 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra3g0323 PK_Tyr_Ser-Thr 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0323 - - gsj:114406979 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0323 3 3794688 3801369 Vra3g0323 3 3794688 3801369 ECH