Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0317 ATGGCAACTCAAGGTCAAGTCATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTGACAATCGAAGACGTTCAGGTGGCTCCGCCTCAAGCCGGCGAGGTTCGAGTTCAAATCCTTTACACTGCTCTCTGTCACACCGATGCTTACACTTGGGGCGGCAAGGACCCCGAAGGTCTCTTCCCCTGTATTCTCGGCCATGAAGCTGCTGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTGATGTTAAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACCAACCTTTGCGGCAAGGTTCGCTCTGCCACTGGAGTTGGGATCATGCTCAATGATGGCAAGAGTCGGTTCTCGATTAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTTAGTCAGTACACAGTTGTCCATGATGTTAGTGTAGCTAAGATTAACCCCTTAGCTCCTCTGGACAAAGTTTGTCTTCTCGGATGTGGTGTTTCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTTGAACCAGGGACTATTGTTGCTATTTTTGGCCTTGGGACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGATTATTGGCATAGATATTGACAGCAAGAAGTTTGATACAGCGAAGAACTTTGGAGTCACCGAGTTTATAAATCCAAACGAACATGATAAACCAATTCAGCAGGTCATAATTGATCGTACTGATGGTGGAGTTGATTATAGCTTTGAGTGTATTGGAAATGTTTCTGTGATGAGAGCTGCTTTGGAAGCCTGCCACAAGGGCTGGGGGACCTCAGTTATCGTGGGTGTTGCAGCATCAGGTCAGGAAATATCAACCCGACCTTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACTGCTTTCGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTCGTAGACAAGTACCTGAAGAAGGAAATCAAGGTTGATGAATACATTACCCATACTTTGACTCTCTCTGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGGTGCCTTCGTTGTGTGCTTTCAACACAAGAATGA 1140 0.4833 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTDVKPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGIMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPLAPLDKVCLLGCGVSTGLGAVWNTAKVEPGTIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDTAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALEACHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0317 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Vra3g0317 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vra3g0317 379 Gene3D - 182 320 - -
Vra3g0317 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Vra3g0317 379 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Vra3g0317 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vra3g0317 379 Gene3D - 13 372 - -
Vra3g0317 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vra3g0317 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 378 - -
Vra3g0317 379 PANTHER ALCOHOL DEHYDROGENASE 3 378 - -
Vra3g0317 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Vra3g0317 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0317 Vra-Chr3 3740931 3743880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0317 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.444 8.88e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0317 K00121 - gmx:100499743 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0317 3 3740931 3743880 Vra3g0317 3 3740931 3743880 ECH
Vra3g0317 3 3740931 3743880 Vra8g0936 8 20762520 20767698 PCT