Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0315 ATGGCTGCTTACACTTGTTCTGCCACCGACCTCCACCCTCTTCTTGGCGGCGGCGCCAATGCCACCGCTGCTGCAGAATACATCTGCGGCCGTTTTGAGGCTATTTCAAACAAGTTTGTGGACACCAGTTATGCTGTTGACAACACTTTTCTTCTCTTCTCTGCTTACCTTGTATTCGCCATGCAACTAGGCTTTGCCATGCTTTGTGCTGGTTCTGTACGTGCCAAGAACACCATGAACATCATGCTGACGAATGTCCTGGATGCCGCCACCGGTGGCATCTTCTTCTACGTGTTTGGCTTTGCCTTTGCTTTTGGCACCCCTTCCAACGGTTTCATTGGGAAACATTTCTTTGGCCTCGATAAGATTCCGTCGTCGGGTTTTGACTACGGGTACTTTCTCTTTCAATGGGCTTTTGCCATTGCTGCCGCGGGGATTACAAGTGGTTCCATCGCGGAGAGAACACAGTTTGTGGCTTATTTGATTTACTCATCGGTTTTGACTGGTTTGGTGTACCCTATTGTGGCGCATTGGTTTTGGTGTTCTGATGGGTGGGGTAGTGCTGCGAGAGGGGAGGGTTTGTTATTTGGATCAGGGGTTATTGATTTTGCTGGGTCTGGTGTTGTTCATTTGGTTGGTGCTGTTGCTGGGTTATGGGGTGCTTTGATTGAAGGCCCTAGAATTGGGAGGTTTGATCATAGTGGAAAGGCTGTGCCAATGAAAGGACACAGTGGAACGTTGGTTGTTTTGGGGACTTTTTTGTTGTGGTTTGGTTGGTATGGTTTCAATCCTGGTTCGTTTCTGAATATTTTGAAGGCTTATGGAGGGAGTGGTTCTTATTATGGGCAATGGAGTGCTGTTGGGAGAACTGCAGTGACCACAACACTTGCTGGATGTTCAGCAGCACTGACAACATTGTTTGCGAAACGTATGCAAACGGGACATTGGAATGTGACTGATGTGTGCAATGGTTTGCTTGGAGGGTTTGCTGCTGTTACTGGAGGGTGTGCAGTGGTGGATCCTTGGGCGGCGATCATATGTGGGTTTGTAGCTGCTTGGGTGCTAATTGGTTTCAACATGCTTGCTGAGAAGTTGAAGTATGATGACCCTCTTGAAGCTGCACAACTTCATGGCGGGTGTGGCACATGGGGGATTATCTTCACTGCTTTGTTTGCTAAGAAGGAGTATGTGAATGAGGTTTATCCAGGACTACCTAGTAGACCTTATGGGTTGTTCATGGGAGGGGGTGCAAGGTTGTTGGCTGCACATGTTGTTCAGATTTTGTCCATCATTGCTTGGGTGAGTGTCACAATGGGAACAGTGTTCTTTGTGCTGTTAAAACTGGACCTGCTGAGGATATCACATGATGAGGAGATGGCGGGGTTGGATTTAACCAGCCATGGAGGAATGGCATATGAGTATAACGAAAAGAATGGAAGAAATCCGGTATTTCAAGCAACTGTTTGA 1467 0.4758 MAAYTCSATDLHPLLGGGANATAAAEYICGRFEAISNKFVDTSYAVDNTFLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYVFGFAFAFGTPSNGFIGKHFFGLDKIPSSGFDYGYFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVAHWFWCSDGWGSAARGEGLLFGSGVIDFAGSGVVHLVGAVAGLWGALIEGPRIGRFDHSGKAVPMKGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGGSGSYYGQWSAVGRTAVTTTLAGCSAALTTLFAKRMQTGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAIICGFVAAWVLIGFNMLAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKEYVNEVYPGLPSRPYGLFMGGGARLLAAHVVQILSIIAWVSVTMGTVFFVLLKLDLLRISHDEEMAGLDLTSHGGMAYEYNEKNGRNPVFQATV* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0315 488 PANTHER AMMONIUM TRANSPORTER 2 479 - -
Vra3g0315 488 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra3g0315 488 Gene3D Ammonium transporter AmtB like domains 28 487 IPR029020 -
Vra3g0315 488 PANTHER AMMONIUM TRANSPORTER 2 479 - -
Vra3g0315 488 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vra3g0315 488 SUPERFAMILY Ammonium transporter 44 452 - -
Vra3g0315 488 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0315 Vra-Chr3 3720009 3721701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0315 5 485 Inorganic Solute Cotransporters AT4G13510 72.822 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0315 K03320 - pop:7459531 781.941