Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0314 ATGGAAGATGAACGCAGAGACAAAGACAAACACGCAACAGAATCTGACAACTCACGGACCCAATTAAAAGTTCTTATTGTAGATGATGATAAGGTTGTTCGACTGACTCACAAAATGCTGTTGGACAGAGTTGGGGTAAAAGATCACGTTGCTGTGGAAAATGGCAAAGAAGCGGTTGAACTTCACAACAATGGTCAAAGTTTTGACCTGATTCTCATGGACAAGGACATGCCAGTCATGAATGGAATTGAGGCGACAAGGACACTTCGTTCAATGGGCGTTAGTTGCAAGATCATTGGTGTGTCGACGTCAACCTCTAATAAGATCTATGTACAAGAATTTGTTGAAGCAGGGCTGGATGACTTCTACACAAAACCCTTGACTGTTCAAATTCTTGGTGAAATTCTTGAGAAGATTAAGTCATGA 426 0.4131 MEDERRDKDKHATESDNSRTQLKVLIVDDDKVVRLTHKMLLDRVGVKDHVAVENGKEAVELHNNGQSFDLILMDKDMPVMNGIEATRTLRSMGVSCKIIGVSTSTSNKIYVQEFVEAGLDDFYTKPLTVQILGEILEKIKS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0314 141 CDD REC_hyHK_CKI1_RcsC-like 24 136 - -
Vra3g0314 141 SUPERFAMILY CheY-like 21 139 IPR011006 -
Vra3g0314 141 Gene3D - 1 141 - -
Vra3g0314 141 SMART REC_2 22 136 IPR001789 GO:0000160
Vra3g0314 141 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Vra3g0314 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 5 140 - -
Vra3g0314 141 ProSiteProfiles Response regulatory domain profile. 23 140 IPR001789 GO:0000160
Vra3g0314 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0314 Vra-Chr3 3717127 3717849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0314 22 128 Response Regulator Gene Family AT3G04280 45.370 4.74e-24 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra3g0314 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0314 - - var:108322984 156.762