Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0313 ATGTTTTTTTCTTGTTCAGGGAGAAAGTACTGGTTATATATGATGAAACCTAAGAACTCAAGTTCTCAATTGAAAGCACTTGTTGTGGATGATGACAGAGTCAACCGAATGACTCATCAAGCGCTGTTGAAAAAAGTTGGGGTGGAAAATCTTGCTTCAGTGGAAAATGGGAAAAAAGCAGTGGAGCTTTACTGCAATGGCGAAAGTTTTGACCTAATTCTGATGGATAAAGACATGCCTGTCATGAATGGAATTGAGGCAACAAAGCAACTTCGTTCAATGGGAATTCGTGACATGATTGTGGGTGTGTCATCATCATCACGTGGTGCAGAGAATGTACAGCAATTCATGGAAGCAGGACTAGATGAGTACTACACAAAACCCTTGACTGTTGATACGCTCAAAGCAATTCTTGATAAGATCAAATCATGA 432 0.3981 MFFSCSGRKYWLYMMKPKNSSSQLKALVVDDDRVNRMTHQALLKKVGVENLASVENGKKAVELYCNGESFDLILMDKDMPVMNGIEATKQLRSMGIRDMIVGVSSSSRGAENVQQFMEAGLDEYYTKPLTVDTLKAILDKIKS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0313 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 142 - -
Vra3g0313 143 SUPERFAMILY CheY-like 23 141 IPR011006 -
Vra3g0313 143 ProSiteProfiles Response regulatory domain profile. 25 142 IPR001789 GO:0000160
Vra3g0313 143 Gene3D - 9 143 - -
Vra3g0313 143 Pfam Response regulator receiver domain 27 138 IPR001789 GO:0000160
Vra3g0313 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 17 142 - -
Vra3g0313 143 CDD REC_hyHK_CKI1_RcsC-like 27 138 - -
Vra3g0313 143 SMART REC_2 24 138 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0313 Vra-Chr3 3714256 3715525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0313 24 130 Response Regulator Gene Family AT3G04280 47.222 2.71e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra3g0313 Response_reg 1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0313 - - var:108322984 253.447