Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0308 ATGGCCGTCGATGAAATTGGAATCTCTTCTCCGACGTCGTTTTCTTATTCTTCTTCTTCTGGATCGTTTGAGAGTCTTTGGAGTGCGATCCTTGGATTGCCTTGGGTGGAAGTGGTGGCAATCTGTGCCAACTTGACACTGTTTATTGTGTTTGTTTTCGTTCTTTTGGCGAGGAGGGTGGTTGTTTGTTTAGGGGGTGGAGTTAGATTTGGTAAGGACAATGGAACCGGCAATGCCAGCCGCGGCCTTGATAGTGTTGATTTAGAAACACGTGACGTTCGGATTGGAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTTTGTTGGTGCAAGTTTTGGTGGTGGGGTTTGATGGGTTTGCCTTGATTAGAGAAAGGGATGAGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTAGTGCAGGGTTTAGCTTGGGTTGCTCTTTGCTTCTCGGCTTTGCAGTGCAAGTTCAAGGCGCGTGAGAGGTTTCCAAATTTGCTCAGAGTTTGGTGGTTTGTGTTATTTGTTGTTTGTTTGTGTGGTTTGTACGTTGATGGGAGAGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTTGCGGTCACTCCTGCTCTTGGCTTTTTGTGTATTGTTGCAATCAGGGGTGTTACTGGTGTAAAGATATGTAGGACTTCTGATGAGCAACAACCATTGCTTGTTGAGGAAGAACCGGGCTGTCTTAAGGTTACTCCCTATAATGATGCTGGACTTTTTAGCTTGGCCACTTTGTCTTGGTTGAATCCCCTTCTTTCCATCGGTGCAAAAAGACCTCTTGAGCTTAAGGACATTCCCCTTGTTGCACCTAATGACCGATCCAAAACAAACTATAAGCTTGTGAATTCTAATTGGGAGAAATTGAAGGCAGAAACCTCATCATCCGGGCAGCCTTCGTTAGCATGGGCGCTTCTCAAGTCATTTTGGAAGGAGGCGGCTTGTAATGCCATATTTGCTGGTGTAACCACTCTAGTTTCGTACGTTGGTCCATACATGATAAGTTATTTTGTTGATTTCTTAGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTTCTTGCAGGGATATTCTTTGCGGCTAAGCTTGTGGAGACCATGACCACCAGGCAGTGGTATCTAGGGGTGGACATCATGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGTTTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTATTGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTCCATGACATGTGGATGCTTCCTCTCCAGATTGTTCTTGCCCTGGCAATTTTGTATAAGAATGTTGGAATTGCCTCTATTGCAACGCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCCGTGGCCAGGATCCAAGAAGATTATCAAGACAGATTAATGGCTGCTAAGGATGAGAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAAGACAGATATAGAGTGAAACTGGAGGATATGCGTGGAGTAGAATTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTTATATTCTGGAGCTCTCCGATTTTTGTTTCAGCAGTCACTTTTGGTACTTGCATATTGTTGGGTGGTCAGCTGACTGCTGGGGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAAACAAAAGTTTCTCTTGATCGGTTATCTGGCTTCCTTCTGGAGGAAGAATTGCAGGAAGATGCAACTATTTCCTTGCCACAAGGCATCACTAACATTGCTATAGAAATTAAGGATGGTGTCTTCTGTTGGGACCTTTCATCTTCCAGACCTACTCTATCAGGGATAAGTATGAAAGTTGAAAAACGGATGCGCGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTTCTGTCTTGCATCCTTGGAGAAATTCCTAAGACTTCTGGGGAAGTCAGAGTGTGTGGATCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCAAGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACACGGTGATCAGACAATTATCGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGACGCTCACACTGGATCTGACTTGTTCAGGGATTATATATTGACAGCACTAGCAGATAAAACAGTCATTTATGTGACGCATCAAGTTGAATTTCTTCCGGCGGCTGATTTGATACTGGTGCTTAAAGAAGGCTGCATCATACAGGCAGGAAAGTATGACGATCTTTTACAAGCAGGAACAGATTTTAATACACTGGTTTCAGCCCACCATGAAGCCATAGAGGCTATGGATATCCCTGTTCACTCCTCTGAAGATTCAGATGAAAATTTATCTCTGGAAGCATCTGTTATGACCAGTAAGAAATCCATATGTTCTGCAAATGATATAGACAGTTTGGCAAAGGAAGTGCAAGAAGGAGCTTCTACTTCAGATCAAAAAGCAATTAAGGAGAAGAAGAAAGCAAAGCGATCGAGAAAGAAACAGCTTGTTCAGGAAGAAGAGAGGATTAGAGGCAGAGTCAGCATGAAGGTCTACTTGTCATACATGGCAGCCGCATATAAAGGCTTGTTAATTCCTCTCATAATCATTGCACAAGCATTGTTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCCGTTCTTCTTCTTGTATACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGCCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCGGCTGGAAGGATCTTGAATAGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGCGGGTTTGCTTCAACAACAATACAACTTATTGGTATTGTTGGGGTAATGACAGAAGTTACGTGGCAAGTTTTACTGTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCATCCTCCAGGGAACTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAGTCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGACCATTCTTTTGTAGTCTGTCTGCAATTGAGTGGCTTTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGCATGGTATTGGTTGTGAGTTTTCCTCGAGGAAGTATAGACCCCAGCATGGCTGGACTTGCTGTGACATATGGACTAAATTTAAATGCACGCTTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCCATCGAGAGAATATATCAGTACAGCCAAATTCCTAGCGAAGCACCCACTATAATTGAAGATTCTCGCCCTCCATCCTCATGGCCAGAAAATGGGACAATCGAAATAATTGATTTGAAGGTCCGTTACAAGGAGAACCTTCCTTTGGTGCTTCATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATCGGAATAGTTGGACGTACTGGCAGCGGAAAATCTACTTTAATTCAGGCACTATTTCGATTGATTGAGCCAACAAGTGGAAGTATCCTTATTGACAACATAAATATTTCTGAGATTGGCCTTCATGATCTTCGCAGCCATCTCAGTATTATCCCACAAGATCCAACTTTATTTGAAGGGACCATCAGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGACAAGTCTCAGCTTGGAGAGGTCATCCGTGACAAAGGACAACAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCACTGCTGCAGCAGTCAAGAATACTAGTACTGGATGAAGCAACAGCATCAGTTGATACCGCCACAGATAATCTTATTCAGAAGATCATCCGAAGTGAATTCAAGGCCTGCACTGTGTGCACCATTGCACATCGTATACCTACTGTGATCGACAGTGATCAAGTTCTTGTGCTAAGTGATGGTCGAGTTGCAGAGTATGATACACCTACAAGATTATTAGAGGATAAGTCTTCCATGTTTCTGAAATTGGTGACTGAGTATTCATCACGTTCGAGTGGTATCCCAGAATTTTAA 4614 0.4339 MAVDEIGISSPTSFSYSSSSGSFESLWSAILGLPWVEVVAICANLTLFIVFVFVLLARRVVVCLGGGVRFGKDNGTGNASRGLDSVDLETRDVRIGTWFKLSVLSCFYVLLVQVLVVGFDGFALIRERDEDLGLALLSVPLVQGLAWVALCFSALQCKFKARERFPNLLRVWWFVLFVVCLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALGFLCIVAIRGVTGVKICRTSDEQQPLLVEEEPGCLKVTPYNDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPNDRSKTNYKLVNSNWEKLKAETSSSGQPSLAWALLKSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDFLVGKEIFPHEGYVLAGIFFAAKLVETMTTRQWYLGVDIMGMHVRSALTAMVYRKGLRISSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDRLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEDMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATISLPQGITNIAIEIKDGVFCWDLSSSRPTLSGISMKVEKRMRVAVCGMVGSGKSSFLSCILGEIPKTSGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFRDYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPVHSSEDSDENLSLEASVMTSKKSICSANDIDSLAKEVQEGASTSDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLVVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEVIRDKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKACTVCTIAHRIPTVIDSDQVLVLSDGRVAEYDTPTRLLEDKSSMFLKLVTEYSSRSSGIPEF* 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0308 1537 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Vra3g0308 1537 Gene3D ABC transporter type 1, transmembrane domain 320 621 IPR036640 GO:0005524|GO:0016021
Vra3g0308 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 869 IPR003439 GO:0005524
Vra3g0308 1537 CDD ABCC_MRP_domain2 1289 1509 - -
Vra3g0308 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1282 1521 IPR027417 -
Vra3g0308 1537 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 87 1537 - -
Vra3g0308 1537 SUPERFAMILY ABC transporter transmembrane region 321 626 IPR036640 GO:0005524|GO:0016021
Vra3g0308 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 974 1244 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0308 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 612 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0308 1537 Gene3D - 1274 1527 IPR027417 -
Vra3g0308 1537 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1537 - -
Vra3g0308 1537 SUPERFAMILY ABC transporter transmembrane region 971 1271 IPR036640 GO:0005524|GO:0016021
Vra3g0308 1537 Gene3D - 622 886 IPR027417 -
Vra3g0308 1537 SMART AAA_5 673 854 IPR003593 -
Vra3g0308 1537 SMART AAA_5 1317 1502 IPR003593 -
Vra3g0308 1537 Pfam ABC transporter 1308 1456 IPR003439 GO:0005524
Vra3g0308 1537 Pfam ABC transporter 664 798 IPR003439 GO:0005524
Vra3g0308 1537 CDD ABCC_MRP_domain1 646 845 - -
Vra3g0308 1537 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524
Vra3g0308 1537 Gene3D ABC transporter type 1, transmembrane domain 933 1272 IPR036640 GO:0005524|GO:0016021
Vra3g0308 1537 CDD ABC_6TM_ABCC_D2 972 1266 IPR044726 GO:0140359
Vra3g0308 1537 Coils Coil 929 949 - -
Vra3g0308 1537 Pfam ABC transporter transmembrane region 974 1218 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0308 1537 Pfam ABC transporter transmembrane region 336 600 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0308 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 868 IPR027417 -
Vra3g0308 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1291 1525 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0308 Vra-Chr3 3625300 3637660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0308 646 862 Calmodulin-binding Proteins AT2G36910 30.932 6.86e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0308 - - gmx:100814850 2751.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0308 3 3625300 3637660 Vra3g0308 3 3625300 3637660 ECH