Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra3g0304 | ATGAAGAAGATCAAGAACCAAATGAAAATCCAGCTTTTCATCTTCTTTTGCTACATTGGTTGTTCCTCCTATGGTTTTTCTGCTGCTGTAAATGATGAAGTGTCGACTTTGCTTTCCATGAAAGCATGTCTCATTGATCCATTGAACACTCTTCGGGATTGGAAACTGCATGACAAAGCACCGGTAAAGGATGCATTTCATTGTAGCTGGACTGGCATCAAATGCAACTCAGCTGGAGCCGTAGAGGAGCTTGATCTGTCCCACAAGAATCTCAGTGGTACAGTATCCGATGTTATACAGAGACTTAAAAGTCTTACCTCTCTCAACTTGTGTTGCAATGCTTTTTCATCACCATTGCCAAAATCCTTAGCCAATCTCACCACACTTAACAAACTTGATGTCAGCCAAAATTTCTTCAATGGTGACTTTCCATTAGGCCTTGGAAGAGCATGGAGACTGATGACCTTAAATGCATCCAGCAATGAATTCTCAGGTTCTCTTCCTGAGGATCTTGGAAATGCCTCTTCCTTAGAGATGCTTGATCTCAGAGGCAGTTTTTTTGAAGGGTCAATTCCAAAATCGTTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCAGGGAACAATCTCACTGGTAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGTCATTCCAGAAGAGTTTGGCAACCTCACCAATCTTAAGTATCTTGATTTAGCAGTGGCCAATCTTGGTGGTGAGATTCCAAGTGTATTGGGAAAGCTCAAGTTATTGAATACGGTTTTCTTTTACAACAACAATTTTGAAGACAGAATTCCAGCAGCAATTGGCAATATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCGGCTGAAATAAGTCAGCTGAAGAATTTAAAACTTCTGAACTTGATGGGCAACCAGTTGTCTGGTCCTGTGCCTCTTGGCTTTGGAGATTTGCCACAACTGGAGGTACTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAGAATTCACCATTGCAATGGTTAGATGTGTCATCCAATTCATTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAACTTATACTATTCAACAATGCTTTCTCTGGTCCAATTCCATCAAGCCTATCAACGTGCTTTTCACTTGTACGTGTTCGAGTTCACAACAATTTTCTTTCTGGGACAGTTCCTGTGGGTCTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTTTCTGGTGGAATTCCTGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTTCCCTCCACCGTCCTTTCCATTCCAAACCTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGAGAAATCCCAGACCAATTCCAGGACTGTCCATCACTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCTTGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTGACTGGTGAAATCCCAAAATCATTAGCTAAGATGCCTTCATTGGCCATGGTTGACCTTTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCAGCTCTTGAAGCACTCAACGTCTCATACAATAAGCTAGAAGGCCCAGTCCCAGCGAACGGAATACTAAGAACTGTAAACCCAAATGACCTTGTCGGCAATGTTGGCCTATGTGGTGGTGTCCTCCCTCCATGTGACCAAAACTCTGCATACTCTTCAAGGGAACGAAGCTTGCGCACAAAGCATATGATTACAGCATGGATCACTGGAATATCATCAATCTTAGTTATTGGGATAGCGATTGTGGTTGCTAGATCTTTGTACATAAGATGGTACACTGATGGGTTTTGCTTCCGAGAAAGATTTTACAAGGGTAGCAAAGGATGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACTAGTACTGAGATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGAATGGGAGCCACTGGGATTGTTTATAAGGCTGAGGTACCGCAATCAAACACAGTTGTGGCAGTGAAAAAATTGTGGAGATCAGGAACTGATATTGAAGTTGGAAGTAGTGATGACCTTGTGGGGGAGGTGAATCTTTTGGGGAGACTAAGGCATAGAAACATTGTTAGACTATTAGGATTTCTTCATAATGACATTGATGTGATGATAGTTTATGAATTCATGCACAATGGCAACCTAGGAGAAGCCTTGCACGGTAGACAAGCAACAAGATTGCTTGTAGACTGGGTTTCACGGTACAACATAGCTCTAGGAGTTGCTCAAGGACTTGCTTATCTTCATCATGACTGTCATCCTCCCGTTATCCATCGAGACATCAAGTCAAACAATATATTGCTTGATGCAAATCTTGAGGCACGGATAGCAGATTTTGGTTTGGCCAAGATGATGATCCAGAAGAATGAAACAGTCTCCATGGTTGCGGGATCTTATGGTTATATTGCCCCTGAATATGGATATGCCTTGAAGGTAGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACGGGAAAGAGGCCTTTAGATCCAGACTTTGGAGAGTCAATAGACATTGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCACTGGAAGAAGCATTAGACCCCAGTGTAGGAAATAGCAGGCATGTTGTAGAAGAGATGCTTTTAGTTCTAAGAATAGCAATTCTGTGCACTGCCAAGCTCCCCAAGGACAGACCAACCATGAGGGATGTCATTATGATGCTTGGAGAGGCTAAGCCTCGAAGAAAGAGCAGTGGCAATGATGCAGCTAACAACAAAGAGTCACCAGTTTTTAGCACATCACCAGTTAATGGCCTAATGTAG | 3063 | 0.4208 | MKKIKNQMKIQLFIFFCYIGCSSYGFSAAVNDEVSTLLSMKACLIDPLNTLRDWKLHDKAPVKDAFHCSWTGIKCNSAGAVEELDLSHKNLSGTVSDVIQRLKSLTSLNLCCNAFSSPLPKSLANLTTLNKLDVSQNFFNGDFPLGLGRAWRLMTLNASSNEFSGSLPEDLGNASSLEMLDLRGSFFEGSIPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGVIPEEFGNLTNLKYLDLAVANLGGEIPSVLGKLKLLNTVFFYNNNFEDRIPAAIGNMTSLQLLDLSDNMLSGKIPAEISQLKNLKLLNLMGNQLSGPVPLGFGDLPQLEVLELWNNSLSGPLPSNLGKNSPLQWLDVSSNSFSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSTCFSLVRVRVHNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNKLHSSLPSTVLSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTGEIPKSLAKMPSLAMVDLSNNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTVNPNDLVGNVGLCGGVLPPCDQNSAYSSRERSLRTKHMITAWITGISSILVIGIAIVVARSLYIRWYTDGFCFRERFYKGSKGWPWRLMAFQRLGFTSTEILACIKETNVIGMGATGIVYKAEVPQSNTVVAVKKLWRSGTDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIQKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDPDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVVEEMLLVLRIAILCTAKLPKDRPTMRDVIMMLGEAKPRRKSSGNDAANNKESPVFSTSPVNGLM* | 1021 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra3g0304 | 1020 | SUPERFAMILY | RNI-like | 287 | 597 | - | - | |
Vra3g0304 | 1020 | Pfam | Leucine rich repeat | 280 | 331 | IPR001611 | GO:0005515 | |
Vra3g0304 | 1020 | Pfam | Leucine rich repeat | 487 | 547 | IPR001611 | GO:0005515 | |
Vra3g0304 | 1020 | SUPERFAMILY | Protein kinase-like (PK-like) | 707 | 988 | IPR011009 | - | |
Vra3g0304 | 1020 | Gene3D | Ribonuclease Inhibitor | 340 | 635 | IPR032675 | - | |
Vra3g0304 | 1020 | SUPERFAMILY | L domain-like | 67 | 337 | - | - | |
Vra3g0304 | 1020 | SMART | serkin_6 | 712 | 1011 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra3g0304 | 1020 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 11 | 1000 | - | - | |
Vra3g0304 | 1020 | ProSiteProfiles | Protein kinase domain profile. | 712 | 1011 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra3g0304 | 1020 | Gene3D | Transferase(Phosphotransferase) domain 1 | 797 | 1013 | - | - | |
Vra3g0304 | 1020 | Gene3D | Ribonuclease Inhibitor | 204 | 273 | IPR032675 | - | |
Vra3g0304 | 1020 | Gene3D | Ribonuclease Inhibitor | 274 | 339 | IPR032675 | - | |
Vra3g0304 | 1020 | Gene3D | Phosphorylase Kinase; domain 1 | 712 | 796 | - | - | |
Vra3g0304 | 1020 | Pfam | Leucine rich repeat N-terminal domain | 31 | 76 | IPR013210 | - | |
Vra3g0304 | 1020 | MobiDBLite | consensus disorder prediction | 1002 | 1020 | - | - | |
Vra3g0304 | 1020 | PANTHER | UNNAMED PRODUCT | 11 | 1000 | - | - | |
Vra3g0304 | 1020 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 839 | 851 | IPR008271 | GO:0004672|GO:0006468 | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 246 | 270 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 510 | 534 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 102 | 125 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 294 | 318 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 438 | 462 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 198 | 222 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 558 | 582 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 486 | 509 | IPR003591 | - | |
Vra3g0304 | 1020 | SMART | LRR_typ_2 | 342 | 366 | IPR003591 | - | |
Vra3g0304 | 1020 | Pfam | Protein kinase domain | 714 | 984 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra3g0304 | 1020 | ProSitePatterns | Protein kinases ATP-binding region signature. | 718 | 742 | IPR017441 | GO:0005524 | |
Vra3g0304 | 1020 | MobiDBLite | consensus disorder prediction | 992 | 1020 | - | - | |
Vra3g0304 | 1020 | Gene3D | Ribonuclease Inhibitor | 29 | 194 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra3g0304 | Vra-Chr3 | 3593072 | 3596806 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra3g0304 | 11 | 1020 | Receptor kinase-like Gene Family | AT1G08590 | 60.058 | 0.0 | 1179 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vra3g0304 | Pkinase | 3.9e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra3g0304 | - | - | gmx:100811284 | 1811.19 |