Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0297 ATGGCGCCGAATCCAAGAGTGATCGCGGCGTTTTCGGCAATGGCGAATCTCGGGATTCCTGAATCAAAAGTGAAACCAGTGTTGAAGAAGCTGCTTAAATTGTATGATAAAAACTGGGAACTTATCGAAGAAGAGAGTTACAGGGCTCTGGCTGATGCAATATTTGAGGAGGAAGAAAACAAGTCGCTGGAGCCAGACCAGAATAACAAAAACAAGAAGGATGGAGATGTGGACAATGAAGAAGCTCATATGCATGAGGAGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCTAACTAATCATGGCCACAGCTTAGCCGCCTTTCCGTTGAAAACTCCAAAATTGGAAGATGGCATAGTGCCTGAAACTAGTTCCAGACTGCAGCCTCAAAGCAGTGCTGCATTATCTGATGGAAATGCAAGGAATGATGCTCCTCATGTTCTCCCACAAGATGCTATTGTCAACAGGGGAAAGCAACCTGTATCACCTCAGTTTACACCTAGAGGGGGAAGGTCTATGTCCGACCATACTTCCCTTGCAGAACCACTAAAAGAGTCAGCAGCTGAACCACGAGCTGCTCCGTTGGCCAATAACAAAATGCTTGTTCCATTCACTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATTTGCCAGCTTGTGAGATTCCCCTTGCTGTGATTCCTCCTGAACCATCAAGCGGAGGAGACTCTCTAAAGGATGCAGCTGAAAAGCAAGATGACCACGATACCCTGGCATCACAATGCAACGATGAAGCCGTTGAGCATGAATATATTATTTCTTCCTCAATTGAAGAACAAACTTCAAATGTAGATGTAGCATTGCCATCTATGGGAGAGGAACAATGTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCCGAGACCAATGTCTCACCTAGCGTGAGAGGAAATAAAGATCCAGTCATTGAAAACGAAATCAGTGTTAGGTCTTCTTCAGCCTTGGCTGAACCTGAAGTTCCTAGTTCTCTATGCTGCCCAAGTGATCAAGATGGTGCTGTACTAGCTTCCAAGAAGGTTAGCACTAATGGTTTCTTACATAGTACTGGTGGGAAGGAGCCAGAGGATCCCATGTCTACAAATTCAGCTACCTCAGTGGTTGTTCCAAAATGTGAATTTACGACTGAAAATGATCTAAGGGCTGTTCACGATGTTAATGACCTGGCAAAGGGTGAAGAAACAGTAAATATTTCATGGGTGAATAACACTACTAGTGATCTTCCGCCACCCTTTCACTACATACCCCAAAACCTTGTCTACCGAGATGCTTATGTTAATTTTTCTCTATCTCGTATTGGAAATGAGGATTGTTGCTCAACTTGTAAGGGAAATTGCGTATTGTCATCTAAACCATGTCGTTGTACCAATAAAACTGGGGGTGAATTTGCTTTTACGGCACATGGCCTACTAAAGGAAGATTTCTTGGAAGAGTGTATTGCCATTAACCGTGATTCCAAAAATTATTTCTATTGCAAAGCCTGTCCATTCGAACAATCAAAGAATGATGATTGTTTGGAACCATGTAAAGGACACCTAAAGCAGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGCCAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAAGTTGCAAGTTGCAGGTGTTCTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACGTTAGAGGATCTTCCAAAAGGAACCTTTGTATGTGAGTTTGTTGGGGAAATTTTAACTGTCACAGAGTTGCACGAGAGGAACATGAAAAATCCAAAAGGTGGGAAATATACATTTCCAGTTTTATTGGATGCAGATTGGGACTTAGGAGATGTGAAGGATAGGGAAGCTCTTTGTTTATATGCGGCATCATATGGAAATGTTGCTAGATTTATTAATCACAGATGCTTGGATGCAAATTTAATTCAGATCCCAGTTGAAGTCGAGTGCCCGACTCATCAGTACTATCATTTTGCGTTCTTTGCAACCAGAAAAATAGCAGCACTGGAAGAACTCACTTGGGATTATGGCATCAACTTTGATGATCACGATGAGTCTGTTGAGCTTTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCACATAGATCCATCAGATCGACAGTTGCATGA 2211 0.4288 MAPNPRVIAAFSAMANLGIPESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEEENKSLEPDQNNKNKKDGDVDNEEAHMHEEPLRPLKRLRLRGQEGQSSRPLTNHGHSLAAFPLKTPKLEDGIVPETSSRLQPQSSAALSDGNARNDAPHVLPQDAIVNRGKQPVSPQFTPRGGRSMSDHTSLAEPLKESAAEPRAAPLANNKMLVPFTLIKPKDEPVDDLPACEIPLAVIPPEPSSGGDSLKDAAEKQDDHDTLASQCNDEAVEHEYIISSSIEEQTSNVDVALPSMGEEQCVKITQTDDVSKESETNVSPSVRGNKDPVIENEISVRSSSALAEPEVPSSLCCPSDQDGAVLASKKVSTNGFLHSTGGKEPEDPMSTNSATSVVVPKCEFTTENDLRAVHDVNDLAKGEETVNISWVNNTTSDLPPPFHYIPQNLVYRDAYVNFSLSRIGNEDCCSTCKGNCVLSSKPCRCTNKTGGEFAFTAHGLLKEDFLEECIAINRDSKNYFYCKACPFEQSKNDDCLEPCKGHLKQKFIKECWSKCGCAKHCGNRVVQRGISCKLQVFLTSDGKGWGLRTLEDLPKGTFVCEFVGEILTVTELHERNMKNPKGGKYTFPVLLDADWDLGDVKDREALCLYAASYGNVARFINHRCLDANLIQIPVEVECPTHQYYHFAFFATRKIAALEELTWDYGINFDDHDESVELFQCRCGSKFCRNIKRSHRSIRSTVA* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0297 736 MobiDBLite consensus disorder prediction 58 100 - -
Vra3g0297 736 Gene3D - 1 60 IPR043017 -
Vra3g0297 736 Gene3D SET domain 413 724 IPR046341 -
Vra3g0297 736 ProSiteProfiles Pre-SET domain profile. 462 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra3g0297 736 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 735 - -
Vra3g0297 736 Pfam Pre-SET motif 414 558 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra3g0297 736 MobiDBLite consensus disorder prediction 167 183 - -
Vra3g0297 736 MobiDBLite consensus disorder prediction 133 148 - -
Vra3g0297 736 MobiDBLite consensus disorder prediction 236 258 - -
Vra3g0297 736 Pfam SET domain 578 699 IPR001214 GO:0005515
Vra3g0297 736 SUPERFAMILY SET domain 420 722 IPR046341 -
Vra3g0297 736 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 736 IPR025776 -
Vra3g0297 736 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Vra3g0297 736 SMART preset_2 410 550 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra3g0297 736 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 735 - -
Vra3g0297 736 MobiDBLite consensus disorder prediction 305 324 - -
Vra3g0297 736 CDD SET_SETDB-like 434 699 - -
Vra3g0297 736 SMART set_7 566 705 IPR001214 GO:0005515
Vra3g0297 736 ProSiteProfiles SET domain profile. 566 699 IPR001214 GO:0005515
Vra3g0297 736 MobiDBLite consensus disorder prediction 58 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0297 Vra-Chr3 3517382 3524577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0297 412 723 Su(var)3-9 homologs AT1G73100 29.940 1.85e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra3g0297 Pre-SET 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0297 - - var:108323268 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0297 3 3517382 3524577 Vra3g0297 3 3517382 3524577 ECH
Vra8g0908 8 20183064 20190964 Vra3g0297 3 3517382 3524577 PCT