Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0290 ATGGGGGATGCTACGATAGATAAGACTCGTGATTTCAACATGGCTTCAAGAAAAGCTGAAGAAGCGGCTTGCAGACGCTATAAGGCAACTCAATGGCTAGAAAGCCAAGTGGGTCCTCTTGGTATACCGAGCCAGCCTTCAGAGAGAGAACTCATTTCTTGCTTGAGAAATGGTTTGATTCTTTGCAATGCCATTAACAAGATTCATCCAGGAGCAGTGCCTAAAGTTGTGGTTGTGGATAATCAAATGCCTTCACAATCACTTACCTGGGATTCTCAGCCATTGCCCGCCTATCAGTATTTTGTAAATTTGCGCAACTTTCTTGTTGCAATGGAGGAATTAAATCTTCCGGCTTTTGAAGCTTCTGATCTTGAAAGGGATACACTAGAGATGGGATCGGCAGCCAAAGTGGTCGATTGCATTTTGGCACTTAAATCGTTTCAAGAGTTGAAGCAGATGAACAATCAGAATGGATACAACAAATGCATAAAATCTCCTTTACCTATGAGAATGCATTCAAGAGCTGCAGGTGCACTACCCTCTGATGCTTGTAGGCACTTGGATTTAACTGCCACAATGGAAAAGATGCCTCCGGTTGAGAGTAATTTTTCGAATAGAGAAGCAGAAATTGTGGAATTACTTGCCAAGCAACTGGTTGACCGTATGTTAGATGCCAAAGAAAATATTGATGGAAACATCATTGCTTCTCTCCGTAAAGAACACCTGGTAGAGGATCCAATAAAGGTTTTTAATCAGATAATGGCATGTTGTAATGGGGAACAGCCAACTACAAGGTTGCGTGAGGATTTTGTTAAAGAAGAGGGGTTATCACTTCTTTCCACATCTACACAATCAGCTGCTTTATCTGATCCTGGCAATTCTAAGGTACCTGCTTTATCTGATCCTGACAATTCTAAGCGTTGCCAAGCATGTCCCGGAAAATGCAAGTGCAACCAGGAACATCTTTTAAACATGCAGGAAAAAGAACTAGTGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAAAGAGTTTGAAGAGATGCAGTCACAGTTTCAAGGATTTTTTGATGACATTGGAAGTCAAATACAGGAGATGTCAACTAAAGCTATTGGATATCACAGAGTAGTAGAAGAGAATAGGAAACTATACAATATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCATCATTCCGGGCTGAATCAAGGAATATTGTTGATTTCATTGGGGAAGATGGTTCTCTATTCATTTTAGATCCATCAAAAACACTGAAAGATGGAAGGAAACTTTTTCAGTTTAATCGTGTTTTTGGTCCAACAGCTGGCCAAGATGAGGTTTACAAGGATACTCAACCATTGATTAGATCTGTGATGGATGGATACAATGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGAAAGACTCACACCATGAGTGGTCCATCAAGTGGAACATTTAAGGATATGGGAATCAATTATCTGGCTCTTAAAGATCTGTTTCAAATGTCTAATGAAAGGAATGACATCATAAATTATGACATTTATGTTCAAATGGTTGAGATTTACAATGAACAAGTTAGAGATCTACTTGCAGAAGACAAATCTGACAACAAATTAGAAATCCGGAGCTGCAATGACGACGGATTTAGCCTTCCAGATGCTAAATTGCGCCCTGTGAAGTCTACAACTGATGTTATGACCCTCATGAAACTTGGTGAGGTTAATCGCTCTGTCAGTTCGACTGCAATGAACAACAGGAGTAGTCGTTCTCACAGTGTACTTACTGTGCATGTTCATGGCAAAGATACATCTGGGAACTCCATTCGCAGTTGCTTGCACTTGGTAGACCTAGCTGGAAGTGAACGAGTAGACAAGTCTGAAGTTACAGGGGAAAGACTAAAGGAAGCACAATTTATTAACAAATCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCTCAAAAGAATTCTCACATACCTTACAGGAACAGCAAACTCACTCTTCTTTTGCAAGATTCCTTAGGTGGACATGCAAAAACATTGATGTTTGCTCATGTGAGTCCGGAAGCAGATTCCTTTGGTGAAACAGTGAGTACTTTAAAGTTTGCTCAGAGGGTTTCGACTGTGGAACTGGGGGCAGCCCGTTTGAACAAAGAAAGCAGTGAGGTTATGCAACTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAACCAAGGACGCTCAGAGAATGTTCCAAAGAAATAGAGAGCCGTACACTCCATCAGAGAAAACTCCATTGCCCTCTCGGAGACTTAGCATTGAGAACTGCCCCGATAAATCTGTGAATCGAGAGGATAAAAGTGGAGTTAAATCACCACTTTTGTTACCTCGTTCCAGAAGATTAAGTTTGGAAGGTCCAAAATCTATCAAGAAAGATGGTCTACAGTATGAGCCAGTATCTATGCAGAAATACCGCCCAATGCAGGATGTAGAGGCCGTATCAAAACTAAATGGCCAGTTCAGCAGTGGCAATTCCAAGTCAGAGTTGCATGCCAAAACCCCTCGAAGTCCTACAAGCATTTCCTATCAAACGAGATTGATAAAATTAAATGATGGCATGCAAGTTCATCCTATTAAACTACCTCAAACACCTGAACCACCAGTTCGGGATGGAAATGATGTCCATGCCTCTAAGGTGATGGGTAGCACAAATGGCAAAGGATCCCAAATAAGAAGATCCTTGAGAACAATTGGAAAACTGATCAATGGCCCTGATAAGAGGAGCCAACAAGTTGAAGTGAAGTCACCCATCAAGGGTACTGGCTATAGAAATAATGTAAAATCACCCATCAGGGGCACTGGCTATACAAATAATGTAAAATCACCAATTTCATCTGTAGAGAAAACGAAGAGAAGGCAATCTCTAACAGGGATTCAAGCACCACTGCCAAACAACTCACGTAGATCTTCACTTGGAGGAAAGCCAGTAGCAGCATATGACGACAAGGAGACAAATGCAAGAACTCCTCCTCCAAATCCTCATTCAGGCACCAAGACTTCAAAACGGTGGCTGTAG 3081 0.4125 MGDATIDKTRDFNMASRKAEEAACRRYKATQWLESQVGPLGIPSQPSERELISCLRNGLILCNAINKIHPGAVPKVVVVDNQMPSQSLTWDSQPLPAYQYFVNLRNFLVAMEELNLPAFEASDLERDTLEMGSAAKVVDCILALKSFQELKQMNNQNGYNKCIKSPLPMRMHSRAAGALPSDACRHLDLTATMEKMPPVESNFSNREAEIVELLAKQLVDRMLDAKENIDGNIIASLRKEHLVEDPIKVFNQIMACCNGEQPTTRLREDFVKEEGLSLLSTSTQSAALSDPGNSKVPALSDPDNSKRCQACPGKCKCNQEHLLNMQEKELVDLKALKLKIKKEFEEMQSQFQGFFDDIGSQIQEMSTKAIGYHRVVEENRKLYNMVQDLKGNIRVYCRIRPSFRAESRNIVDFIGEDGSLFILDPSKTLKDGRKLFQFNRVFGPTAGQDEVYKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSSGTFKDMGINYLALKDLFQMSNERNDIINYDIYVQMVEIYNEQVRDLLAEDKSDNKLEIRSCNDDGFSLPDAKLRPVKSTTDVMTLMKLGEVNRSVSSTAMNNRSSRSHSVLTVHVHGKDTSGNSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVELGAARLNKESSEVMQLKEQVENLKIALATKDAQRMFQRNREPYTPSEKTPLPSRRLSIENCPDKSVNREDKSGVKSPLLLPRSRRLSLEGPKSIKKDGLQYEPVSMQKYRPMQDVEAVSKLNGQFSSGNSKSELHAKTPRSPTSISYQTRLIKLNDGMQVHPIKLPQTPEPPVRDGNDVHASKVMGSTNGKGSQIRRSLRTIGKLINGPDKRSQQVEVKSPIKGTGYRNNVKSPIRGTGYTNNVKSPISSVEKTKRRQSLTGIQAPLPNNSRRSSLGGKPVAAYDDKETNARTPPPNPHSGTKTSKRWL* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0290 1026 ProSiteProfiles Calponin homology (CH) domain profile. 23 149 IPR001715 GO:0005515
Vra3g0290 1026 SMART ch_5 25 147 IPR001715 GO:0005515
Vra3g0290 1026 MobiDBLite consensus disorder prediction 753 819 - -
Vra3g0290 1026 MobiDBLite consensus disorder prediction 941 1026 - -
Vra3g0290 1026 MobiDBLite consensus disorder prediction 948 993 - -
Vra3g0290 1026 Gene3D Kinesin motor domain 334 718 IPR036961 -
Vra3g0290 1026 PANTHER KINESIN-LIKE PROTEIN KIN-14L 7 1013 - -
Vra3g0290 1026 PANTHER KINESIN-LIKE PROTEIN KLP-3 7 1013 - -
Vra3g0290 1026 MobiDBLite consensus disorder prediction 756 770 - -
Vra3g0290 1026 MobiDBLite consensus disorder prediction 282 303 - -
Vra3g0290 1026 Coils Coil 720 750 - -
Vra3g0290 1026 PRINTS Kinesin heavy chain signature 465 486 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 PRINTS Kinesin heavy chain signature 587 604 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 PRINTS Kinesin heavy chain signature 617 635 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 PRINTS Kinesin heavy chain signature 666 687 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 SMART kinesin_4 390 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 Pfam Calponin homology (CH) domain 24 146 IPR001715 GO:0005515
Vra3g0290 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 715 IPR027417 -
Vra3g0290 1026 SUPERFAMILY Calponin-homology domain, CH-domain 19 156 IPR036872 -
Vra3g0290 1026 ProSiteProfiles Kinesin motor domain profile. 392 716 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 Pfam Kinesin motor domain 398 715 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0290 1026 Gene3D - 8 165 IPR036872 -
Vra3g0290 1026 Coils Coil 323 350 - -
Vra3g0290 1026 MobiDBLite consensus disorder prediction 840 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0290 Vra-Chr3 3394050 3401851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0290 322 716 Calmodulin-binding Proteins AT5G65930 41.147 1.46e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0290 K10406 - gmx:100786642 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0290 3 3394050 3401851 Vra3g0290 3 3394050 3401851 ECH