Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0288 ATGGTGATGATGATGTGGGAAGATGTAACAGTTGAACGACCTGCAAGTTTTGGAGCACAGAGGAAGAAGTTGTTGCTTAGTGGAATAACTGGCTTTGCTGAACCAGCTAGGGTTATGGCTGTCATGGGTCCTTCTGGCTGCGGCAAAACCACCTTTCTTGACTCTTTGACTGGAAAACTTGCTCCAAATGTTGTAGTGACCGGGAACATNCTAATCAATGGGAAGAAAAACTTGAATTCCAGAGATGTGTCCTATGTAGCTCAAGAGGAACTTTTCTTGGGAACTTTGACTGTAAAAGAGACTCTCACATTCTCTGCAAACATGAGACTTCCTTCCAAAATGACCAAAGAAGAGATAAACAAAGTGGTGGAAGAAACCATAATGGAAATGGGTCTGGAAGATTGTGCAGATACAAGGATTGGGAATTGGCATTGTAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAAATTTTAACACAACCCCATGTCTTACTTCTTGATGAACCTACAACTGGCCTTGATAGTGCCTCAGCTTTCTATGTCATTCAAGCACTATGCCACATTGCTCACAAAGGAAAGATAGTTATCTGCTCCATTCACCAACCCAGTAGTGAGATTTTTTATCTATTTGATGACTTGCTTTTGCTTTCAAGTGGGGAAACTGTTTATTTTGGACAAGCAAAGAATGCTCTAAAGTTTTTTGCTGATGCAGGGTTTCCCTGTCCTACCAGAAGAAATCCTTCAGATCATTTCCTGATGTGTACTAATTTGGACTTTGATTTGATTGCTGAAGTACTAGAGAGGACACAATTATGTTTGGCATCATCGAAGTCAACAATGGAAATGAGAAAATCAGAGATCAGAAGGACACTGATTGAGACTTACAAAAGTTCAAAGCTAATGTTCAATGCAAGAAGTAAAGTTCAACAACTGAAACACAATGAAGAACAAGGAATTAAGCACTACACAGGTAGCACTACCACGTGGAGGAAACAATTGTGTACATTGACCAAGCGGTCTTTCTTAAACATGACTAGGGACATTGGTTACTACTGGCTGAGGATAATATTCTACATAATGATAGGAATCAGCCTTGGCACCCTCTTTTTTCACATTGGCACAGGAAACAGCTCAATCTTGGCTAGAGCAAAGTGTGTATCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGTGTTTGTAGTATCAAACATCATATCATCATTCCCTTTCCTTGTTCTAACATCTTTTTCCTCCGGAACAATCATTTACTTCATGGTGCAATTTCATCCGGGTTTAACTAATTATGCATTTTTCTGTATCAACTTATTCTGCTGCCTATCTGTTGTCGAGTGTTGCATCATGGCTGTAGCCTCACTGGTCCCCAATGTGCTGATGGGCATAGGAATAGGAACTGGTGTAATTATCTTCATGATGATGCCCTCCCAAATATTCAGATCATTACCTGAGCTTCCAAAGTTCTTTTGGCGCTATCCTATGTCCTACCTTAGTTTTGCTTCCTGGGCAGTGCAGGGAGAATACAAGAATGACATGTTGGGGGTAGAGTTCGATCCTTTGCTACCTGGTGATGCCAAGGTTAGTGGAGAAAAAGTTCTATCATCGATACTTGGGGTTCCATTGGATCATAACAAATGGTGGGACTTAACAGCATTGGCTACCTTATTATTAGTTCACAGACTTGTTCTTTTCTTGGTGCTTCGGTTTGTCAAAAGAGCAAAATCACCTAAGCTGTGGTTCTATGCAAAGAAAAGTCTACACATTGGAAAAAGATGTTTGCTCAATGACAAGCCATCTGTCTCTTCGAGGAAACTAGCTCAGCATCCATTATCGTCTCAAGAGGGTCTTATGTCCCCAAACCTTGCAATGTAA 1980 0.4061 MVMMMWEDVTVERPASFGAQRKKLLLSGITGFAEPARVMAVMGPSGCGKTTFLDSLTGKLAPNVVVTGNXLINGKKNLNSRDVSYVAQEELFLGTLTVKETLTFSANMRLPSKMTKEEINKVVEETIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPHVLLLDEPTTGLDSASAFYVIQALCHIAHKGKIVICSIHQPSSEIFYLFDDLLLLSSGETVYFGQAKNALKFFADAGFPCPTRRNPSDHFLMCTNLDFDLIAEVLERTQLCLASSKSTMEMRKSEIRRTLIETYKSSKLMFNARSKVQQLKHNEEQGIKHYTGSTTTWRKQLCTLTKRSFLNMTRDIGYYWLRIIFYIMIGISLGTLFFHIGTGNSSILARAKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAVFVVSNIISSFPFLVLTSFSSGTIIYFMVQFHPGLTNYAFFCINLFCCLSVVECCIMAVASLVPNVLMGIGIGTGVIIFMMMPSQIFRSLPELPKFFWRYPMSYLSFASWAVQGEYKNDMLGVEFDPLLPGDAKVSGEKVLSSILGVPLDHNKWWDLTALATLLLVHRLVLFLVLRFVKRAKSPKLWFYAKKSLHIGKRCLLNDKPSVSSRKLAQHPLSSQEGLMSPNLAM* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0288 659 SMART AAA_5 35 225 IPR003593 -
Vra3g0288 659 Pfam ABC-2 type transporter 205 257 IPR043926 GO:0140359
Vra3g0288 659 Pfam ABC-2 type transporter 337 542 IPR013525 GO:0016020|GO:0140359
Vra3g0288 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 248 IPR003439 GO:0005524
Vra3g0288 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 240 IPR027417 -
Vra3g0288 659 Gene3D - 6 257 IPR027417 -
Vra3g0288 659 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 3 629 - -
Vra3g0288 659 Pfam ABC transporter 34 175 IPR003439 GO:0005524
Vra3g0288 659 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 3 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0288 Vra-Chr3 3358946 3364931 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0288 33 217 Calmodulin-binding Proteins AT2G36910 26.396 6.73e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0288 K05681 - gmx:100802207 1106.28