Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0287 ATGGAATTGAAGGTGGTGACAAAGATGCAAGTGAGCCTGCTGCTGCTGATGATGATTGCGTTAGCAAGAACAGCAACTGCAGCAGATGACCAAGCCCTGCCCGGCTGCCCCAACAAGTGCGGAGATGTTTCAATTCCATACCCCTTTGGCGTAGGTGTGTCAAATATCACCGGAGAAAACTGTTCCTTTCAGACAGACTTGAAACTCAACTGCACAAACTCCACTCTATACGTATATAACATCCCAGTTCTGAACATAACCCTCCTAGGTCAATTGGAGATGAATTTCTTCGTCTCCGCTATCTGCAAAGTCAACATTTTTAACGGAGTAACAGAAGCCAACATAGCCAAACTCAATATTCCATCCTTCACCATTTCCAGCACGGAAAACAAGTTCATGAGTATAGGCTGCGACACGTACGGGTTTCTAGAAAGTTACGTCAACGATTCTATTCACTCAACAACAGGGTGCTTGACAAAATGTTGGGACAATCTAGAAAATTTGGAAAACATGCAAACGAATGATGGTAAATGTGCAGGCAGAGGGTGCTGCCAGGTGGATATACCGCCTGGAATGAAGAATATAGTTATAGAAGCAAATACCTTTAATAATTTCAGAAACTCTTCCGATTCCAACATCTGCAGCGTTTCGTTTGTGATGAAAAATGGCGGCTACAATTTCTCCGTGGATCATTTGAAGCGCATCCCATTCAATAGTACTCCCATGATTGTTGATTGGAGTGTTGGAGATGCTGGCTGTAACGTTTCCAAGGATAAAGCCAACTATGCGTGCAAAAGTGATAATAGCGTTTGCGAGGACCCACCCTCTGCCGGTGGAAATGGCTACCTATGCAAATGTAAACCAGGTTTTGAGGGCAACGCTTACCTTCCCCAAGGTTGCACAGACTTTCCAGATTGTAAAAGGGACAAACACAACTGCGCAAGAGCAGAATATTGTCATGAAACTCCTGGCTCTTTTGAATGTTTATGTCCTGAGGGAATGATCGGAAATGCAACAAACGAAGGTGGAGGATGCCAGCCAAAGCAGCGGTCTGATGCATTTACCAAGATCTTCATTGGAGCAGGTGTAGGATTAATTGCTCTCTTTGTGGGAGCTTCTTGGCTGTACTTGATGCTCCAGAAAAGGAGAGTCCTCAAACTAAAAGAAAAGTTCTTTCAGCAAAATGGAGGCATAATTCTAACACAGAAACTCTCTACTAGAAGAGATTCGTCTCAATCCACCGCAATTTTCAGTGCCGAGCAACTCAATAAAGCCACCAACAATTTTGATGAGAATTTGATCATCGGCAAAGGAGGTTATGGAACAGTTTTCAAAGGAGTTCTCTCTAATAATCAAGTTGTTGCTATCAAGAAGTCCAAAATAGTGGACGTGAGCCAGGTGGAGCAATTCATCAACGAGGTCATTATACTGTCACAGATTAATCACAGGAACGTGGTCAAACTCCTAGGTTGTTGTCTAGAGACAGAAGTTCCTTTATTGGTGTATGAATTTGTTAAAAATGGCACTCTTTTTGATTATTTGCATAAACAAAGCCAAGTGGGCAATGTATCTTGGAAAACACGTCTAAGGATTGGCGCTGAAGCAGCTGGAGCTTTGTCATATCTACACTCAGCAGCTAGCATACCCATCATCCACAGGGATGTGAAAACTGCCAACATACTCTTAGATGACAATAACACTGCCAAAGTTTCTGACTTTGGAGCTTCGCGATTGGTTCCACAAGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAGTACATGCAATCAGGCCAATTGACTGAAAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTTGTAGAACTGCTAACTGGGGAGGAGCCTTTCTCTTTTCAAAGGGCAGAAGATAAACGAAGTCTTACATTTCACTTTGTATGTAGCTTGGAAGAGGATCATCTATTTGATGTTCTTCAGATTGGTGTTGAGGATGAAGAAAATAAACAGGAGATCATGCAGGTTGCTATTCTTGCTGCCAGGTGCTTGAAACTTAGAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCAATGGAATTGGAGGGAATAAGGCTTATGGACAAACATCCTTGGACCAATACAAACCAAAATTTTGAGGAGAGACAATACTTGCTTTCTGAGGCACAAAGCATTCGTGAACCTGGTGACAGTAGTGGCCAACAGAATATTACTGGATATGATAGCGTGAGGGAACTTCAATTAATGGACTTTGGTGATGGAAGATGA 2283 0.4279 MELKVVTKMQVSLLLLMMIALARTATAADDQALPGCPNKCGDVSIPYPFGVGVSNITGENCSFQTDLKLNCTNSTLYVYNIPVLNITLLGQLEMNFFVSAICKVNIFNGVTEANIAKLNIPSFTISSTENKFMSIGCDTYGFLESYVNDSIHSTTGCLTKCWDNLENLENMQTNDGKCAGRGCCQVDIPPGMKNIVIEANTFNNFRNSSDSNICSVSFVMKNGGYNFSVDHLKRIPFNSTPMIVDWSVGDAGCNVSKDKANYACKSDNSVCEDPPSAGGNGYLCKCKPGFEGNAYLPQGCTDFPDCKRDKHNCARAEYCHETPGSFECLCPEGMIGNATNEGGGCQPKQRSDAFTKIFIGAGVGLIALFVGASWLYLMLQKRRVLKLKEKFFQQNGGIILTQKLSTRRDSSQSTAIFSAEQLNKATNNFDENLIIGKGGYGTVFKGVLSNNQVVAIKKSKIVDVSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVKNGTLFDYLHKQSQVGNVSWKTRLRIGAEAAGALSYLHSAASIPIIHRDVKTANILLDDNNTAKVSDFGASRLVPQDQTEIATIVQGTFGYLDPEYMQSGQLTEKSDVYSFGVVLVELLTGEEPFSFQRAEDKRSLTFHFVCSLEEDHLFDVLQIGVEDEENKQEIMQVAILAARCLKLRGEERPSMKEVAMELEGIRLMDKHPWTNTNQNFEERQYLLSEAQSIREPGDSSGQQNITGYDSVRELQLMDFGDGR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0287 760 ProSitePatterns Protein kinases ATP-binding region signature. 435 458 IPR017441 GO:0005524
Vra3g0287 760 Gene3D Laminin 253 345 - -
Vra3g0287 760 ProSiteProfiles Protein kinase domain profile. 429 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0287 760 SMART egf_5 305 346 IPR000742 -
Vra3g0287 760 SMART egf_5 252 301 IPR000742 -
Vra3g0287 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 729 - -
Vra3g0287 760 Gene3D Phosphorylase Kinase; domain 1 396 504 - -
Vra3g0287 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 729 IPR045274 GO:0007166
Vra3g0287 760 CDD STKc_IRAK 435 702 - -
Vra3g0287 760 SUPERFAMILY EGF/Laminin 302 337 - -
Vra3g0287 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Vra3g0287 760 Pfam Protein kinase domain 433 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0287 760 Pfam Wall-associated receptor kinase galacturonan-binding 36 88 IPR025287 GO:0030247
Vra3g0287 760 SUPERFAMILY Protein kinase-like (PK-like) 409 700 IPR011009 -
Vra3g0287 760 Gene3D Transferase(Phosphotransferase) domain 1 505 726 - -
Vra3g0287 760 SMART serkin_6 429 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0287 Vra-Chr3 3351172 3353844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0287 9 760 Receptor kinase-like Gene Family AT1G21230 42.333 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra3g0287 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0287 - - gmx:100819535 1027.31