Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0286 ATGGAGTTGCAGAGTAATGAAGTTATTGCAGTGGAGAATAAGAGAAGAGTGTGTTTGGTTTGGGAAGATTTGACAGTGGTGGCTTCAAATGGTAGGAGTAGTGCAGAAAAGGAACTGCTAAAAGGTTTAAATGGTTATGCAGAACCCAACAGGATTATGGCACTCATTGGTCCTTCAGGATCTGGGAAATCAACTTTGCTTGCTGCACTTGCTGGGATACTTCCGAACAATGTTAGGATGACCGGAAATGTGATACTGAATGGGAGTACGAGAAGGACGACAGGCTGCAAAGACGTTTGTTATGTTACTCAAGAAGACTATTTCCTGGGAACTCTAACAGTGAAGGAAACCCTCACATATGCAGCTCGTTTGAGACTTCCTTCATATACAACCAGAAATGAGATTGAGAAGGTGGTAACAAATGTATTGGCTGAAATGGGTCTGGAAGATAGTGCAGAAAGCAGGCTTGGGAATTGGCATTTGAGAGGCATAAGTACAGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAAATCTTAACTCAACCTCATGTAATGTTTCTGGATGAACCCACTAGTGGCTTGGATAGTGCAGCCTCTTTCTATGTCATTTCTTCTCTATCAAACATAGCACATGACGGAAGAATAGTCATATGCTCCATTCACCAGCCCAGTGGTGAAATCTTCAACCTTTTCGATGATCTGGTCCTCCTTGCAGCAGGTGAAACAGTATACTTTGGACAAGCAACTATGGCTGTAAAGTTCTTTGCTGATGCAGGGTTTCCTTGTCCAATCCGAAAGAATCCACCCGAGCATTTCCTTCGTTGTGTTAGCCCAGAGTTCGATACTGTCACAGCCTTAATAAAGTCGAAAATTGAAAACAACGCTTCATCGTCGTGCAATTCTCTAATGGATATGACGACAGAGGAGATTAAATCGGAACTTGTAATGAACTACAAGAACTCCATACATTCAGAAAATGCAAGGAGAAAAATCAGAGAAATGAAAAAAATTTTGCAGGAAGAACCTTTAGTTGGGAAGATATATGATACCAGCTGGCTGAAGCAGCTATGCACACTGACAAATAGATCCTTCCTAAATATGACTAGAGACTTCGGCTACTATTGGCTAAGGATTGTATTGTATATCATCCTATCAGTGAGTGCTGGTTGTCTTCTTGTCAACGTAGGAACAAGTAATGAAGCAATCATATCTAGAGGCAAATGTGATGGATTCATCTTTGGTTTAATGATCTTTCTGTGTTTAGGAGGCGTACCCTTTTACCATGAAGAATTAAAGGTCTTCAAACGTGAAAGATTTGGAAAGCATTATGGAGAGGCCATCTTTGTACTCTCACATTTCCTCTCATCACTGCCTTTTGTTCTTGCAATTTCCCTCTCTTCAGGGACAATACTTTACCATATGGTGAACTTTCATCCAGGCTTCTCTCATTACTGCTACTTTTGCATGAATATATTTTGCTTCATTTCTGTCACGGAGGGCTGCACATTACTCGTTGCAGCACTTTTACCCGACCTATTAGTAGCACTTGGAACTGCAACTGGTGTAATTGTATTCTTGATGGTGCCATCTAATGTATTCAGAAGTCTAGCAGACATTCCAAAATTCTTCTGGCGCTATCCAATGTCCTATCTCAGCTACATTACCTGGTCAATACAGGGTCAATTCAAGAATGACCTGATTGGTCTTGAATTTGAACCACAAGTGGCTGGGGATGCCAAGATAAAGGGTGAAGATATACTTCAAGTTATGTTTGGAATCAGGACTGATTATTCAAAATGGTGGGACTTAGGAGTTTTAGTTTGCTTCTTGATATGCTATAGAGTGCTGTATTACTTGGCTCTTAAACACAAAGAGAGAGCTTCATCATTGTGGCAGATCAAAAGGACCATCCTACACATTTTTCTCAAAAAACCCTCTTTGAAGGACAAATATACTCCTTCCAAGCGGCATCATTCCTTGCACCCTTTGTCAGTTCAGGAAGGTCTTAACTCTCCATTGTCATAA 2025 0.4089 MELQSNEVIAVENKRRVCLVWEDLTVVASNGRSSAEKELLKGLNGYAEPNRIMALIGPSGSGKSTLLAALAGILPNNVRMTGNVILNGSTRRTTGCKDVCYVTQEDYFLGTLTVKETLTYAARLRLPSYTTRNEIEKVVTNVLAEMGLEDSAESRLGNWHLRGISTGEKRRLSIGIEILTQPHVMFLDEPTSGLDSAASFYVISSLSNIAHDGRIVICSIHQPSGEIFNLFDDLVLLAAGETVYFGQATMAVKFFADAGFPCPIRKNPPEHFLRCVSPEFDTVTALIKSKIENNASSSCNSLMDMTTEEIKSELVMNYKNSIHSENARRKIREMKKILQEEPLVGKIYDTSWLKQLCTLTNRSFLNMTRDFGYYWLRIVLYIILSVSAGCLLVNVGTSNEAIISRGKCDGFIFGLMIFLCLGGVPFYHEELKVFKRERFGKHYGEAIFVLSHFLSSLPFVLAISLSSGTILYHMVNFHPGFSHYCYFCMNIFCFISVTEGCTLLVAALLPDLLVALGTATGVIVFLMVPSNVFRSLADIPKFFWRYPMSYLSYITWSIQGQFKNDLIGLEFEPQVAGDAKIKGEDILQVMFGIRTDYSKWWDLGVLVCFLICYRVLYYLALKHKERASSLWQIKRTILHIFLKKPSLKDKYTPSKRHHSLHPLSVQEGLNSPLS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0286 674 CDD ABCG_EPDR 16 246 - -
Vra3g0286 674 Pfam ABC-2 type transporter 221 321 IPR043926 GO:0140359
Vra3g0286 674 SMART AAA_5 49 249 IPR003593 -
Vra3g0286 674 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 18 631 - -
Vra3g0286 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 249 IPR027417 -
Vra3g0286 674 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 264 IPR003439 GO:0005524
Vra3g0286 674 Pfam ABC-2 type transporter 355 560 IPR013525 GO:0016020|GO:0140359
Vra3g0286 674 Pfam ABC transporter 40 192 IPR003439 GO:0005524
Vra3g0286 674 Gene3D - 8 257 IPR027417 -
Vra3g0286 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 18 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0286 Vra-Chr3 3334510 3339943 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0286 33 233 Calmodulin-binding Proteins AT2G36910 26.636 4.48e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0286 K05681 - aip:107646291 917.146