Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0285 ATGAAAATAACAAATAATAATAAAGGCTTCTTCTTCGAAGGAGGAAGAAAGTCTACTCCACCGCCGTTTTTGCTCAAGACCTACATGCTTGTCGAGGATCCGGCTACCGATAACGTCGTCTCGTGGAACGTTGACGGGACGGCGTTCGTGGTGTGGCAGCCGGCCGAGTTTGCTCGTGATCTCCTCCCAACGTTCTTCAAGCACAGCAACTTCTCCAGCTTTGTACGCCAACTAAATACTTATGGTTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTGAATGAGAGGTTCAAGAAAGGTGAAAGAGAAAAGCTAAATGAGATTCAGAGAAGAAAAGCTTGGAGTAACAAGCAACCAACAGGTCATCAAGATTGTGATGAAGATGAAAGGTCATCATCAACTTCATCATCTTCTGGGTACAGTACTCTGGTGGATGAAAACAAGAGGCTTAAGAAAGAGAATGGAGTCTTGAACTCTGAGCTAAGGAGCATGAAAAGAAAGTGCAAGGAGCTTGTTGATTTGGTGGCCAAATATTCATCACATGCACAAGACAAGGAAGAAGATGAAAGGCCAATGCTGTTTGGTGTGAGGTTAGATGTTGAAGGAGGGAGGGAGATTAAGAGGAATAGAGCTGAGATCAGTGAAAGCGCAAGCATCATGCTTTCTCAGTCATGCAAATAG 684 0.4371 MKITNNNKGFFFEGGRKSTPPPFLLKTYMLVEDPATDNVVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSFVRQLNTYGFRKVATSRWEFLNERFKKGEREKLNEIQRRKAWSNKQPTGHQDCDEDERSSSTSSSSGYSTLVDENKRLKKENGVLNSELRSMKRKCKELVDLVAKYSSHAQDKEEDERPMLFGVRLDVEGGREIKRNRAEISESASIMLSQSCK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0285 227 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 MobiDBLite consensus disorder prediction 109 145 - -
Vra3g0285 227 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Vra3g0285 227 Coils Coil 148 168 - -
Vra3g0285 227 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 8 227 - -
Vra3g0285 227 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 Gene3D - 15 113 IPR036388 -
Vra3g0285 227 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0285 227 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 227 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0285 Vra-Chr3 3320860 3322973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0285 11 179 HSF AT2G41690 57.732 1.03e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra3g0285 HSF_DNA-bind 9.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0285 K09419 - gmx:100802739 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0285 3 3320860 3322973 Vra3g0285 3 3320860 3322973 ECH
Vra3g0285 3 3320860 3322973 Vra8g0312 8 3994118 3997372 PCT