Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0284 ATGGGAGCTGCTTGGAGGCAGTTGAAGGTCATGCTCCGCAAGAACTGCCTCCTCAAAATTCGTCATCCTTTCGTCACTGCCGCCGAGATTTTGCTCCCTACGATTGTATTGTTGCTGTTAGTGGCTGTAAGGACAAAAGAGGATACACAAATTCATCTTGCTCAACCGCACATTCAAAAAGATATGTTTGTGGAAGTGGGCAAAGACATATCACCCAACTTTCAACTAGTTTTGCAATCATTGTTGGAAAAGGGAGAGTATTTAGCTTTTGCGCCAGATACGGATGAGACGAAGCTGTTGATAGACGTAGTGTCAATAAAATTTCCCCTCTTGAAGTATGTTAATAGAGTATACAAAGATGAGGCGGAGTTGGAAACCTACATCCGCTCTGATGCTTATGGCACCTGCAATCAAGCAAGGAATTGTTCAACTCCAAAAATTAAAGGAGCAATCGTGTTTTATGAACAAGGCCCTCAATCATTTGATTACAGCATACGCCTCAATCATACATGGGCTTTCTCTGGTTTTCCTGATGTTACAACAATAATGGACACCAATGGTCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCTATACCGACAATGCAATACAGCATCAGTGGGTTTTTGACTCTCCAGCAAATGGTTGATTCGTTCATAATATTAACAGCCCAGCTGTCTGACTTAAATCTGAATGCTGAAAGTCTGGGCCTTCTTCTTCCAGGCTTCAATAACTCTAATTTCTCTATGAAAAATCCATGGACTCAGTTTAACCCTGCTCACATACGAATTGTTCCATTTCCCACCCGAGAGTATACTGATGACCAGTTTCAGTCAATCATAAAGAAAGTAATGGGAATATTGTACTTATTGGGGTTTCTCTATCCAATTTCTCGCCTAATCAGTTATTCTGTGTTCGAAAAGGAACAGAAGATTAAAGAAGGACTATATATGATGGGCCTAAAAGATGGTATATTTCATCTTTCTTGGTTTATCACATATGCATTGCAGTTTGCAATTTCTTCTGGAATCCTTACAGCTTGCACCATGTATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTTTTTGCTTTTGGGCTAAGTGCAATCATGCTCTCATTCCTTATATCAACATTTTTCAAACGGGCTAAAACAGCTGTAGCTGTTGGAACTCTATCTTTTCTTGGAGCTTTTTTCCCATATTACACAGTAAATGACGAGGGAGTTTCAATAATCTTGAAGGTTATTGCTTCTTTGCTTTCACCTACTGCCTTTGCTTTGGGTTCGATCAACTTTGCTGATTATGAGCGTGCACATGTCGGACTTCGTTGGAGTAACATATGGAGGGAATCATCTGGAGTGAACTTTCTTGCATGTCTTCTGATGATGATACTTGATACACTGCTATATTGTGCGGTTGGACTTTATTTTGACAAGGTTCTTCCGAGGGAGTATGGAAGGAGATACACATGGAGCTTTATTTTCCAAAGGGACTTCTGGAGGAAGAAAAAAGTTGTAAAAGATAGTTCCTCCGTTTCTAATGTTAAAGTATTTGGTAAGAATTCTGAGTCAGAAGGGAAGATTTCAAGGGAATATACTTCCAGACCTGCCATTGAACCAATAAGCTTAGACATGAAACAGCAGGAGCTTGATAGCAGGTGCATTCAAATCAGGAATTTACATAAAGTGTATGCTACAGAGAAAGGAGATTGCTGTGCTGTTAACTCTTTACAGCTGACACTGTACGAAAACCAGATTCTTGCCCTCCTAGGACATAATGGAGCTGGGAAAAGCACGACAATCTCAATGCTTGTTGGTCTGCTTCGTCCTTCTTCTGGGGATGCTTTGGTATTTGGAAAGAATATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTAACAGTTAGAGAACATTTGGAACTGTTTGCTATATTAAAGGGAGTGGAGGAACACTTGTTGGACAATGCTGTTGTTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAACTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGCAACAGTAAGGTTATAGTCCTTGATGAACCTACCAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCGGATGAATTAGGTGACCGGATAGCGATCATGGCCAATGGCTCTCTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACCCTAGTGAAGTCAGCTCCCACTGCTTCCATTGCTAGTGATATAGTATACCGTCATGTTCCAAATGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTTAGGCTTCCAATGGCATCCTCATCGGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTTTCGAACATGGAATTGAATGGTAAAATTGAAAAAGACAATATTGGTATTGAAAGCTATGGCATATCTGTAACAACCCTGGAAGAGGTATTTTTAAGAGTTGCAGGATGTGATGCTGATGAGGTTGAATGCTTTGAAGAAAATAACCATTCTCTGATATCAGACTCTGTGGCTTCACTTCCTACTAATGATGATGCTTCCCCAAAAATAAGTTGTCTTAAAATTCTTGGAAATTATAAGAGGATTCCGGGTTTGGTGTCTACCATGTTGGGAAGAGCTTGTCAATTAATTTTTGCTACAATTTTTAGTTTTATCAACTTCTTGGGTGTGCAGTGCTGCAGTTGTTGTCTCATTACTAGGTCAACATTTTGGCAACATCTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGCAGAGATAACAAAACAATTGTTTTCCAGCTAATGATTCCTACTCTCTTCCTGTTCGTTGGTCTTCTATTTCTTAAGCTCAAGCCACATCCTGATCAGCAATCGCTGACCCTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGTGGTGGTGGGGGAGGTCCAATTCCATTTAATCTTTCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCATGGGAGGTTGGATACAGAGGTTCAAGTCGAGCTCATACAGATTCCCTGATTCAGAAAAAGCATTGGCTGATGCAGTGGAAGTAGCGGGACCAACACTGGGACCTGCTCTTCTTTCTATGAGTGAATATTTGATGTCTAGTTTTAATGAGTCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAGTAATGATGGAAGCTTAGGATACACTGTATTACACAACTGTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCGATTCTTAGGCTTGCAACTCAAGACACAAATATGACAATTCGAACACGCAACCACCCTCTGCCAACGACACAAAGCCAGCGCTTACAACGTCATGATCTGGATGCTTTCTCTGCTGCAGTTATTGTCAACATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAGCTAATCAGTGGGGTTTCTATCCTGTCATATTGGGCGTCTACATATATTTGGGACTTTGTGAGCTTCTTGTTTCCTGCCTCTGTTGCCATAGTTCTCTTTTATATCTTTGGTCTGGAACAGTTTGTCGGAGGGGTTTCTTTGCTACCAACAATCCTCATGCTCTTGGAATATGGACTTGCAATTGCATCATCAACCTATTGCCTTACATTTTTCTTTTTTGACCACACCATGGCTCAGAACGTGGTTCTGTTGATTCACTTTTTCACTGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATGCCATCAACAATGAGTACCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCGGATGGTCTTGCTTCATTAGCTCTTTTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGGATGTTACTGGGGCTTCCATCTGTTATCTAGCTGTTGAGAGCTTTAGTTATTTTCTGTTGACACTTGCACTTGAAATTTTGCCTTCTATCAAATTGACTTCATTCGTGATCAAAAAGTGGTTGGAAAAAATTAATATCTTCCGGCATGATAGTTCTTATTTGGAACCTCTGCTGGAATCTTCCTCTGAAACTGTTGTTACGGACTTCGATGAAGATGTAGATGTAAAAACAGAAAGAAATAGAGTACTTTCTGGTTCTCTTGACAATTCCATTATCTACCTGCGCAATCTTCGCAAGGTATATTTTGAGGAGAAGCATCATGGAAGAAAGGTTGCAGTAGATTCTTTAACTTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCAAAGGCTGCTCGTCGATATATTGGATATTGTCCACAATTTGATGCCCTATTGGAATACCTAACTGTTCAAGAGCATCTTGAACTTTATGCCAGAATAAAAGGTGTTCCAGATTTTGCAATTGAAAATGTTGTTATGGAAAAGTTGGCCGAGTTTGACTTGTTGAAACATGCCAATAAACCATCATTTTCGCTTAGTGGAGGAAATAAAAGAAAACTGTCTGTTGCAATTGCAATGATTGGTGACCCACCTATAGTCATTCTTGATGAACCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATGTCTAGGATCTCAACAAGACGAGGAAAGACTGCAGTAATTCTGACTACACACAGCATGAATGAAGCCCAAGCCTTATGTACCAGAATAGGAATAATGGTTGGTGGACAATTGCGATGTATTGGAAGTCCACAGCATCTAAAAACAAGATTTGGGAATCATTTGGAACTAGAGGTCAAACCTACCGAAGTGAGTTCTGCAGACTTGCAAACCCTCTGCCAAGATATTCAAGAAAGACTTTTTGAAGTCCCGTCTCATCCTAGAAGCTTACTTAATGACCTTGAAATTTGTATTGGGGGCACTGACTCTGTCACGTCAGGAAATACCTCCATTGCGGAGATTAGCTTGACAGGAGAAATGATAAGCTTAATTGGGCACTGGCTTGGTAACGAAGAAAGAGTAAAGACATTGATCTCTTGTACGCCTGTCTTTGAAGGAGCTTCTCATGAACAATTATCAGAACAACTGTTTCGTGGTGGTGGCATTCCATTGCCAGTATTTTCTGAGTGGTGGCTGTCTAAACAAAAATTCTCAGAAATTGATTCATTTATTCTCTCTTCATTTCGTGGAGCAAGGTGCCAAGGGTGCAATGGTTTGAGCATCAGATATCAGTTACCATATAATGAGGATTTTTCCTTGGCAGACGTTTTTGGACTTCTTGAAAGAAATAGGAATACATTTGGGATTGCGGAGTACAGCATCAGCCAGTCAACTCTAGAGACAATATTTAATCATTTTGCAGCTAATCCATGA 5679 0.3994 MGAAWRQLKVMLRKNCLLKIRHPFVTAAEILLPTIVLLLLVAVRTKEDTQIHLAQPHIQKDMFVEVGKDISPNFQLVLQSLLEKGEYLAFAPDTDETKLLIDVVSIKFPLLKYVNRVYKDEAELETYIRSDAYGTCNQARNCSTPKIKGAIVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAIPTMQYSISGFLTLQQMVDSFIILTAQLSDLNLNAESLGLLLPGFNNSNFSMKNPWTQFNPAHIRIVPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGILTACTMYNLFKYSDKTLVFAYFFAFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSIILKVIASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCAVGLYFDKVLPREYGRRYTWSFIFQRDFWRKKKVVKDSSSVSNVKVFGKNSESEGKISREYTSRPAIEPISLDMKQQELDSRCIQIRNLHKVYATEKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLRPSSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHLLDNAVVNMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPNATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPVSNMELNGKIEKDNIGIESYGISVTTLEEVFLRVAGCDADEVECFEENNHSLISDSVASLPTNDDASPKISCLKILGNYKRIPGLVSTMLGRACQLIFATIFSFINFLGVQCCSCCLITRSTFWQHLKALFIKRAISARRDNKTIVFQLMIPTLFLFVGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVMGGWIQRFKSSSYRFPDSEKALADAVEVAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQSNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATQDTNMTIRTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVSILSYWASTYIWDFVSFLFPASVAIVLFYIFGLEQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLMPSTMSTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWDVTGASICYLAVESFSYFLLTLALEILPSIKLTSFVIKKWLEKINIFRHDSSYLEPLLESSSETVVTDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEYLTVQEHLELYARIKGVPDFAIENVVMEKLAEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVMSRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLQTLCQDIQERLFEVPSHPRSLLNDLEICIGGTDSVTSGNTSIAEISLTGEMISLIGHWLGNEERVKTLISCTPVFEGASHEQLSEQLFRGGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARCQGCNGLSIRYQLPYNEDFSLADVFGLLERNRNTFGIAEYSISQSTLETIFNHFAANP* 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0284 1892 Pfam ABC-2 family transporter protein 202 480 - -
Vra3g0284 1892 Pfam ABC-2 family transporter protein 993 1394 - -
Vra3g0284 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Vra3g0284 1892 CDD ABC_subfamily_A 1464 1690 - -
Vra3g0284 1892 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524
Vra3g0284 1892 CDD ABC_subfamily_A 560 781 - -
Vra3g0284 1892 ProSitePatterns ABC transporters family signature. 1601 1615 IPR017871 GO:0005524
Vra3g0284 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 799 IPR027417 -
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 1318 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1317 1653 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1652 1889 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1652 1889 - -
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 5 1318 - -
Vra3g0284 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1317 1653 - -
Vra3g0284 1892 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Vra3g0284 1892 Pfam ABC transporter 1486 1628 IPR003439 GO:0005524
Vra3g0284 1892 Gene3D - 1456 1706 IPR027417 -
Vra3g0284 1892 Gene3D - 546 796 IPR027417 -
Vra3g0284 1892 SMART AAA_5 588 770 IPR003593 -
Vra3g0284 1892 SMART AAA_5 1494 1680 IPR003593 -
Vra3g0284 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1463 1693 IPR027417 -
Vra3g0284 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1464 1702 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0284 Vra-Chr3 3254592 3306776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0284 554 837 Calmodulin-binding Proteins AT2G36910 25.000 1.49e-15 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0284 K05643 - gmx:100803263 3417.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0284 3 3254592 3306776 Vra3g0284 3 3254592 3306776 ECH