Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0283 ATGGCTTCGTCTTCCTCCGATCCTGGAAAGTCCGCGGAGACGTCGGAAGCGGCGGTGCCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGCGCAGCTGGAAAACGGAGCTCTATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGGTGGGAGTCGTCATATGGCCGCATATCTGGATCTGATTACTTCAATAGCATGCATTATGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCATCGGAAGAAAAAAAGCTTGGTTCTGCTGGAGACATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGAAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATTCTTTCTCAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCGTCAAAGAAACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTACCCTTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTGTGGACATCTCTTGTTCCCGTACTTCCTGCCGGCCTTTCTCGTACAGATGAGGTTACCAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1254 0.4482 MASSSSDPGKSAETSEAAVPTDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRISGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKKQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGSDRLDIAMGMSGTMPLQRNVYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0283 417 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 416 - -
Vra3g0283 417 MobiDBLite consensus disorder prediction 258 281 - -
Vra3g0283 417 PANTHER BNAA03G19580D PROTEIN 8 416 - -
Vra3g0283 417 MobiDBLite consensus disorder prediction 298 337 - -
Vra3g0283 417 Coils Coil 301 321 - -
Vra3g0283 417 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Vra3g0283 417 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Vra3g0283 417 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Vra3g0283 417 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Vra3g0283 417 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vra3g0283 417 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Vra3g0283 417 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Vra3g0283 417 MobiDBLite consensus disorder prediction 295 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0283 Vra-Chr3 3240909 3244732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0283 21 415 AP2-EREBP Transcription Factor Family AT2G41710 63.391 1.43e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0283 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0283 K09285 - gmx:100786651 772.311