Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0277 ATGGGTGAACGATGTCATTCAGATGCTCCGTTAGATACTATTTCCAGTGGGAGTGAGGAACACTTGATCTCTCTTTTACCAAAAGAATGTAAGATTGGATCCATTAGTTTGGATGAAAATGATGATGATTATCCTGTGCCACGACCTGGAATGATCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAAATATGCCGACCAAATGGGCTTCAGCGTCAAGACTAGAACCTCAAAAAGAGGAGGCGAAGGTCAAGTTAAATATTTGATACTTGTATGTTCCGAGAGATCAAGAACTGGTATTGATGAATCAAAGAAACAGTATTGTACTGCTAGGATAAATTTGACTTTACGTAAAGATGGAACCTATCAAATTAGTGCAGTTACTCTCGGTCATAATCATGAATTGGGTTCTCAGAGAATTACTATTAAGATGAAGTGTATAAGGAAATTGGATCCAGAAGTTATTGACATGCGTGTTAAGAAGATGTCAGAGCAAAATAATTGCGGAAATTACCTTCAGACAGAAAGACAGTGGATTAGAGAAAATGGAGATGGTGATGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGCAATTGACTTGGATGATTTGTTCAGCGCGAAGAATGTATTTTGGTCCGATGGAAGGAGTAGAGCTGCATATGAATCTTTTGGTGATGTGGTGACAGTTGATACTACATGCCTTTCCAATCACTACAAAGTGCCACTTGTAACTTTCATTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGTTGTTATCATCTGACGACTCAGAGTCATTTGCTTGGTTGTTCAAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACAAGGAATCGTAACAGATCATTGCTGCATGGCCATGCAGAAAGCAGTTGAAACCGTATACCCCTCCATTCGACATCGATGGTGTTTGTCAAATATAATGGAAAAGCTTCCCCAACTAATTCATAAGTATGCTAATTGCAAGTCCTTAAGAGATCGTATGCATAATGTTGTCTATGACACACCAACAACAGATGAATTTGAGGGAAAATGGAAGAAGATTGTGGAGGATTTTGATCTCAAAGACAATAAATGGTTGAAGGAATTGTTCCTTCACCGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATACTAATCCGCAAAGTGAAAGTAGGCATGAAATTTTTGACGGATTTATAAACCAACAAACAACTTTGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAGTATAAGGCTGAGAAGGAGTATATAGCTGACATACATTCATCCAGTAATAGTCAGACTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAATATGCTTACACTCATGCAAAGTTTCTGGAGGTTCAACGTGAATTTGTTGGAAAGGCTGATTGTAACGTCTTTGTTGCTTGTGAAGATGGTTCTATTTGTCGCTACAATGTGATAGAGGATATGATAACAGAGGATAAGCCTAAGGAGTCCGTGGTCGAAGTCATATATAACAGGGAAGATTGTGATATAAAATGCAACTGTGGCTTGTTTGAGTTTAGAGGTATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTAAAGGAGGTCCCGTGTAAATATATTTTAGACAGATGGAGGAAAAATATTGTGAGGAAGCATGTTTTTATAAAAACCAGCTATGGTGTTGTGCATTTTGAACCTCAAGTGCAGAGGTTTGATCTGTTATGCAAACAATTCAATAATATTGCTGCCGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGAGTCATGGACATCGTTACCGATAAACTCTTCTCTTGTGGATGTAGAGAAACACAACAATATGATACATTGA 1971 0.3886 MGERCHSDAPLDTISSGSEEHLISLLPKECKIGSISLDENDDDYPVPRPGMIFRSEAEARLYYTKYADQMGFSVKTRTSKRGGEGQVKYLILVCSERSRTGIDESKKQYCTARINLTLRKDGTYQISAVTLGHNHELGSQRITIKMKCIRKLDPEVIDMRVKKMSEQNNCGNYLQTERQWIRENGDGDALQKYLVRMQEQDRNFFYAIDLDDLFSAKNVFWSDGRSRAAYESFGDVVTVDTTCLSNHYKVPLVTFIGVNHHGQSVLFGCGLLSSDDSESFAWLFKSLLHCMSGVPPQGIVTDHCCMAMQKAVETVYPSIRHRWCLSNIMEKLPQLIHKYANCKSLRDRMHNVVYDTPTTDEFEGKWKKIVEDFDLKDNKWLKELFLHRHRWAPSFVRGGFWAGMYTNPQSESRHEIFDGFINQQTTLKQFVDQYNNALQYKAEKEYIADIHSSSNSQTCVTKSPIERQFQYAYTHAKFLEVQREFVGKADCNVFVACEDGSICRYNVIEDMITEDKPKESVVEVIYNREDCDIKCNCGLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIVRKHVFIKTSYGVVHFEPQVQRFDLLCKQFNNIAAAAAEFEGTSSFVKDTLCNLKEKLESWTSLPINSSLVDVEKHNNMIH* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0277 656 SMART 26again6 533 560 IPR006564 GO:0008270
Vra3g0277 656 Pfam SWIM zinc finger 531 555 IPR007527 GO:0008270
Vra3g0277 656 PANTHER OS03G0843700 PROTEIN 36 649 - -
Vra3g0277 656 ProSiteProfiles Zinc finger SWIM-type profile. 520 558 IPR007527 GO:0008270
Vra3g0277 656 Pfam FAR1 DNA-binding domain 62 137 IPR004330 -
Vra3g0277 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 649 IPR031052 GO:0006355
Vra3g0277 656 Pfam MULE transposase domain 236 330 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0277 Vra-Chr3 3149856 3152719 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra3g0277 MULE 1.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0277 - K17604 gmx:102660547 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0277 3 3149856 3152719 Vra3g0277 3 3149856 3152719 ECH