Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0272 ATGGCCGAGTGTTTTGTCTTTGATATTACTGAATCGTTGCTAAGCAAGCTAGCTTCTTATGTTTACGAAGAAGCTTCTCGAGCCTATGGGGTGTATGACGATCTTCGAGGGATCAAAGACACTTTGTCAATAGTTAAAGGTGTGCTGTTAGACGCTGAGGAGAAGAAGGAACAAAATCATGGCGTGCGGGAATGGCTCAGGCAGATTCGAAACGTCTGCTTCGATGCTGAAGATGTGTTAGATGGACTTGATTGCCAAAACCTGAGAAAGCAAGCTCTCAAAGCTTCAGGCAACACTAGGATGAAGGTAGATCACTTCTTTTCTTCATTTAATTCTCTTGTCTTTCGCTTTAGGATGGCTCATCAAATAAAACATGTTAGGCGTAGACTGGATAAGATAGCAGCTGATGGGAACAAGTTTGGTCTTGAGAGAATTGATGTTGACAACAGACTTGTCCAAAGGAGAGAAATGACTTATTCCCATGTTGATGCTTCTGGGGTGATTGGAAGGGAGAGTGATAGGGAAAAAATTATCAAGCTTTTGATGCAACATCACCCTAATGGTGATGGTTATGGAGATCAAAGTATTTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGAAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGAATGGATGATCTTTTCCAGTTGAAGATGTGGGTGTGTATCTCTGATGACTTTGACATAAGGCAGATACTTATTAAAATCATCAACTCTGCTTCTGCTTCAGCTCCAACTATTGCTCTTGCTCACCAAGAAAACATTAAAAACTTTGATATTGAGCAGCTACAAAGTCGTCTTAGACACAGGCTTTCTGGTCAGAAATATTTGCTAGTCTTGGATGACGTATGGAATGATAATCGTCCAAAATGGACACAGTTGAAAGATTTAATTAAAGTGGGTGCAGTAGGAAGCAAAATCTTGGTGACAACACGTAGTAACTCAATTGCTTCAATGATGGGCACTGTTCCCTCGTACGCTTTGGAAGGTCTTTCACTGGAGAATTGTTATGCTTTGTTTAACAAATGGGCATTTAAGGAAGGAGAAGAAAAAAAATATTCAAATCTAGTAGAGATTGGAAAAGAAATTGTGAAAAAATGTATAGGGGTGCCACTAGCCGTGAGAACTTTAGGAAGTTCTCTGTTCTTAAATTTTAATTTAGAAAGGTGGGAATTTGTAAGAGACCATGGCATTTGGAACTTAAAACAAGAAAAAGATGACATTTTACCTGCTCTTAAGTTGAGCTATGACCAAATGCCTTCCTATTTGAGGCACTGTTTTGCTTTCTTTTCTCTTTACCCAAAAGATTATGGCTTTACTGGTGCTAAAGTTGTTAATCTTTGGGTGTCACTTGGGTTACTTCGATCTGAGGTTGGAAGTCAAAAGCTAGAGAATGCTGCAAGACTGTATATAGACGAGTTACATTCGAGATCATTTCTTGAGGATTTTGAGGACTTTGGCAACATTTACTATTTCAAAGTGCATGATTTGGTACATGATCTTGCCCAGTATGTTGCAAAAGAAGAGATTCTTGTGGTAGACTCAGGCACCCGGAATATACCTGAGCAAGTAAGGCATTTATCAGTTGTTGAAAATTCACTAAGGGATGCTTTGTTTCCCAAGTCCAGTAGAGTGAGAACTATATTATTTCCGACAGATGGAGTTGGTGTTGACAGTGTAGCTCTTTTGGATGCATGGATAGCAAGATACAAATTCTTGCGTATTTTAGATTTAAGTGATTCCTCTTTTGAGACATTTCCCAATTCAATTGCTAAACTGGAGCATCTGCGAGCTCTCAGTCTTGAAAATAACCGAAGGATAAAAAGACTTCCTCAGTCCATATGCAAACTCCAAAATTTGCAAGTTTTGACTTTGAGAGGATGTGTGGAGCTTGAAACATTGCCTAAAGGATTCGGGATGTTAATCAGCCTTCGACAATTGTCTATCACCACAAAACAGTCTATTCTTTCAGAGGATGAATTTGCAAGCTTGATCAATCTTAATACTTTGAGTTTTGAATTTTGTGACAATTTGATGTTTCTGTTCCGAGGGACACAACAACTCAAATCCCTTGAAGTTTTGATTGTTCAATCATGTAGGAGTCTGGAGTCCTTTCCTTTTCATATTCTCCCTAAACTGGAGGTTCTATTTGTCATAAGGTGTGAGATGCTAAATCTGTCCTTGAACTGTGAAAACCCCATCGAGAGATTGAGGATGAAGTTTCTGCATATTGAGGAATGTCCAAGGCAACAGACATTGCCTCAATGGATTGAAGGAGCTGCAGAAACTTTGCAGACGTTGTTAATTTCAAATTTGCATAGTCTTGAGATGCTTCCCGAGTGGCTTACATCAATGACTCATCTTAAGATGCTTCATATTGTTAACTGTCCTCAGCTGTTGTATCTCCCGAGTGACATGCATCGCCTCGGTGCCCTTGAAGATTTGACCATAGATGGTTGTTCTGAATTGTGTCAAAAATGTGAACCACAATCTGGTGAGTACTGGTCCTTCATTGCTCACATCAAACACCTTTCCATTGGAGAAACAAGAGAAGGGAAACTCCTCTTCCAAATGCAAAAGCAGATTCGATTGAAATTGCAGGATTTGCAGAATTAA 2649 0.3949 MAECFVFDITESLLSKLASYVYEEASRAYGVYDDLRGIKDTLSIVKGVLLDAEEKKEQNHGVREWLRQIRNVCFDAEDVLDGLDCQNLRKQALKASGNTRMKVDHFFSSFNSLVFRFRMAHQIKHVRRRLDKIAADGNKFGLERIDVDNRLVQRREMTYSHVDASGVIGRESDREKIIKLLMQHHPNGDGYGDQSICVIPIVGIGGLGKTTLAKLVFNDKRMDDLFQLKMWVCISDDFDIRQILIKIINSASASAPTIALAHQENIKNFDIEQLQSRLRHRLSGQKYLLVLDDVWNDNRPKWTQLKDLIKVGAVGSKILVTTRSNSIASMMGTVPSYALEGLSLENCYALFNKWAFKEGEEKKYSNLVEIGKEIVKKCIGVPLAVRTLGSSLFLNFNLERWEFVRDHGIWNLKQEKDDILPALKLSYDQMPSYLRHCFAFFSLYPKDYGFTGAKVVNLWVSLGLLRSEVGSQKLENAARLYIDELHSRSFLEDFEDFGNIYYFKVHDLVHDLAQYVAKEEILVVDSGTRNIPEQVRHLSVVENSLRDALFPKSSRVRTILFPTDGVGVDSVALLDAWIARYKFLRILDLSDSSFETFPNSIAKLEHLRALSLENNRRIKRLPQSICKLQNLQVLTLRGCVELETLPKGFGMLISLRQLSITTKQSILSEDEFASLINLNTLSFEFCDNLMFLFRGTQQLKSLEVLIVQSCRSLESFPFHILPKLEVLFVIRCEMLNLSLNCENPIERLRMKFLHIEECPRQQTLPQWIEGAAETLQTLLISNLHSLEMLPEWLTSMTHLKMLHIVNCPQLLYLPSDMHRLGALEDLTIDGCSELCQKCEPQSGEYWSFIAHIKHLSIGETREGKLLFQMQKQIRLKLQDLQN* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0272 882 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 788 - -
Vra3g0272 882 Pfam Leucine rich repeat 584 639 IPR001611 GO:0005515
Vra3g0272 882 SUPERFAMILY L domain-like 504 854 - -
Vra3g0272 882 CDD RX-CC_like 2 134 IPR038005 -
Vra3g0272 882 Gene3D - 342 425 IPR042197 -
Vra3g0272 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 440 IPR027417 -
Vra3g0272 882 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vra3g0272 882 Pfam NB-ARC domain 193 428 IPR002182 GO:0043531
Vra3g0272 882 Gene3D - 150 334 IPR027417 -
Vra3g0272 882 Gene3D Ribonuclease Inhibitor 526 882 IPR032675 -
Vra3g0272 882 PANTHER DISEASE RESISTANCE PROTEIN RP 6 788 IPR044974 GO:0006952
Vra3g0272 882 Gene3D - 10 124 - -
Vra3g0272 882 PRINTS Disease resistance protein signature 198 213 - -
Vra3g0272 882 PRINTS Disease resistance protein signature 281 295 - -
Vra3g0272 882 PRINTS Disease resistance protein signature 378 392 - -
Vra3g0272 882 PRINTS Disease resistance protein signature 697 713 - -
Vra3g0272 882 Gene3D - 426 515 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0272 Vra-Chr3 3103199 3106181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0272 196 834 WRKY Transcription Factor Family AT5G45050 23.238 1.33e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0272 - - gmx:100794422 1390.94