Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0270 ATGGCCGAATCGTTTCTGTTCAGCATAGCAGAGTCACTTATAGAAAAGCTTTCTTCTCATGCTTTTCAAGAAGCTTGTCGAGTGGTGGATTTATACGACGATCTTCAAGACCTTACAAAAACTCTCTCTTCAGTTAAGGCTGTGCTATTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGTGAATGGCTCACTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCGAAACAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCATTTCTTCTCCACCTCTAATCCACTTCTTTTTCGTTTCAAGATGGCACAACAAATTAAAGATATCAACAACAAACTAGACAAGGTTGCAGCGAATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTGATGATGATGATACAAGTCTATCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAAGAGTGCTTCCCTTTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAACGATGAAGATGTTTCTCCTCACCAACAGAATTTGAACATGCTGGATCTGGAGCAACTGCAAAAGCAATTGAAAAGAAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAGGTGCAGTAGGAAGTAAAGTTGTAGTGACTACACGCAATCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCGGAAGAGGAGTCACTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAAAGGGGTTCCACTGGCAGTGAGAACGGTAGGTAGTTTACTATTCTCGAAATTTGAGGNNAGTGAATGGNAATATGTGAGTNNNANTGAAATCTNGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTATCCAAAGGATTATGAATTCGGTAGTAATGAAATAGCTGCGATTTGGGGGTCACTTGGACTCATTGCACTACCAAAAACGAATAGGACACTTAAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTTGGCACTTCTTACAGTTTTAGAATACATGATTTGGTGCATGATCTAGCTCTTTTTGTTGCAAAGGATGAGTGTCTACACGTGCGTTTCAACATTCAAAATATTCCAGAAAATGTTCGACATCTGTCTTTTGCTGAAAGCAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGCAGGAGGTGCCAACGGTGAAACTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACGTGGTTCGGCATTCGAGACTTTGCCCCGTGGCATTGCTAAGATGAAACATTTGAGATATTTGGACATTAGCCATAATCTCAAGATTAAGAGACTCCCCGATTCTATTTGCAATCTCCAAAGTTTGCTAGTGTTGATAATTTTCAGATGCATGGAGCTGGAAGTATTGCCCAAAGGATTAAGAAAATTAATCAGTATCCGTCATTTGATGTTTAGTACAAAGCAAACTGTTTTGCCTGTAAATGAGATCGCCAAATTGGTGTCACTGGAATACTTGGTTATTGAATCATGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATACGTTTGGAACTGTCGGAGTCTAAAGTCATTGTCGCTGTACGGTCAATGTTTTCCTGAATTAGAAACATTGGTTGTTGGGGACTGCGGTAATTTGGACTTGGAACTGTGGAAGGGCGATCATGAAGAAGAAAGCCCCAAGCTGAAGTTAAAAATGATTGAATTTTCAAATTTTTCACAGCTGGTGGGCTTGCCTAAATGGATTCAGGAAACTGCCAACTCCTTAGGGTGTTTGGCTGTTTCAAATTGTGAGAATATTGAAACACTTCCAGATTGGTTACCAACTCTGACTAATCTGAAAACACTTCATCTAATAGGTTGCCCAAATTTGGTATCTCTCTCAGATAACATTCATCACCTCACTGCACTTGAAACTTTGAAGATTGAAGATTGTGCTAACTTATATAAAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAGACTTTGTGATTTATAATTAG 2577 0.3896 MAESFLFSIAESLIEKLSSHAFQEACRVVDLYDDLQDLTKTLSSVKAVLLDAQQKQDHNHQLREWLTQLKTVFSDAEDVLDEFECQTLRNKVVKAHGSTKDKVSHFFSTSNPLLFRFKMAQQIKDINNKLDKVAANRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPDDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVSPHQQNLNMLDLEQLQKQLKRKLSGQKFLLVLDDVWNEDRVKWVELRNLIQVGAVGSKVVVTTRNHSIASMMGTVPSHILEGLSEEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCKGVPLAVRTVGSLLFSKFEXSEWXYVSXXEIXNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYEFGSNEIAAIWGSLGLIALPKTNRTLKDVANQYLHELLSRSFLQDFENFGTSYSFRIHDLVHDLALFVAKDECLHVRFNIQNIPENVRHLSFAESSLFDNLVIKKSAAVRTVLFPNGAGGANGETILNTCLSKFKCLRVLDLRGSAFETLPRGIAKMKHLRYLDISHNLKIKRLPDSICNLQSLLVLIIFRCMELEVLPKGLRKLISIRHLMFSTKQTVLPVNEIAKLVSLEYLVIESCHNVESIFGGVKFPSLKTLYVWNCRSLKSLSLYGQCFPELETLVVGDCGNLDLELWKGDHEEESPKLKLKMIEFSNFSQLVGLPKWIQETANSLGCLAVSNCENIETLPDWLPTLTNLKTLHLIGCPNLVSLSDNIHHLTALETLKIEDCANLYKKYEPNVGEFWPKISHIKDFVIYN* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0270 858 CDD RX-CC_like 2 134 IPR038005 -
Vra3g0270 858 Gene3D - 420 508 IPR036388 -
Vra3g0270 858 Gene3D - 335 419 IPR042197 -
Vra3g0270 858 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vra3g0270 858 Gene3D - 10 124 - -
Vra3g0270 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 434 IPR027417 -
Vra3g0270 858 PANTHER OS08G0543100 PROTEIN 26 834 - -
Vra3g0270 858 Coils Coil 35 55 - -
Vra3g0270 858 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vra3g0270 858 PRINTS Disease resistance protein signature 195 210 - -
Vra3g0270 858 PRINTS Disease resistance protein signature 275 289 - -
Vra3g0270 858 PRINTS Disease resistance protein signature 372 386 - -
Vra3g0270 858 PRINTS Disease resistance protein signature 793 809 - -
Vra3g0270 858 Gene3D Ribonuclease Inhibitor 546 852 IPR032675 -
Vra3g0270 858 PANTHER DISEASE RESISTANCE PROTEIN RP 26 834 IPR044974 GO:0006952
Vra3g0270 858 SUPERFAMILY L domain-like 498 834 - -
Vra3g0270 858 Pfam Leucine rich repeat 579 631 IPR001611 GO:0005515
Vra3g0270 858 Gene3D - 149 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0270 Vra-Chr3 3054897 3057752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0270 178 822 WRKY Transcription Factor Family AT5G45050 22.449 8.02e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0270 - - pvu:PHAVU_001G133600g 1208.74