Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0264 ATGGCGGAATCATTTCTCTTCAGCATAGCAGAGTCACTCATAGCGAAGCTTGCTTCTCATGCTTTACAAGAAGCTTCTCGAGTGGTGGGTGTATACGACGATCTTCGAAACCTTGGAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTTCGTGAATGGCTCACTCAACTTAAAATTGTCTTCTCCGAAGCAGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCCACCTCTAATTCACTTCTTTTTCGCTACAAGATGGCACAACAAATTAAATATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGCATAAGTTTAGTCTTCAAATAATTGACGTTGACACACGTGTTGTTCATCAGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTAATAGGAAGGAAAAACGATAAAGAAAAGATCATAAAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATCTGTTACCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCGAGGAATGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGCAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGACTTGGAGCAACTGCAAAACCAATTGAAAAGCAAACTTTCCGGTAAAAAATTTCTTCTTGTTTTGGATGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTGGGTGCAGCAGGAAGTAAAGTTGTAGTGACCACACGCAGTCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCGGAAGAGGAGTCACTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAAAGGGGTTCCACTGGCAGTGAGAACGGTAGGTAGTTTACTATTCTCGAAATTTGAGGNNAGTGAATGGNAATATGTGAGTNNNANTGAAATCTNGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTATCCAAAGGATTATNNNTTCNNTAGTNATGAAATANCTGNGATTTGGGGGTCACTTGGACTCATTGCACTACCAAAAACGAATAGGACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTTGGCACTTCTTACAGTTTTAGAATACATGATTTAGTGCATGATCTCTCCCTATTTGTTGCGACGGATGAGTGTCTACACGTGAGTTTCAACATTCAAAATATTCCAGAAAATATTCGGCATCTGTCTTTTGCTGAAAGCAGTTTGTTTGACAATTTAGTGATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCGAAAGGTGCAGTAGGTGCCGACGGTGAAACTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGAATTTAGATGGTTTGACATTCGAGACTTTGCCCCGTACCATTGCTAAGATGAAACATTTGAGATATTTGAACATTAGCAATAATCGCAAGATTAAGAGACTCCCCGATTCTATTTGTAAGCTTCAAAGTTTGCAAGTGTTGATAATTAGCGGATGCATAGAGCTGGAAGTATTGCCCAAAGGATTAGGAAAATTAATCAATATCCGTCATTTGTTGTTTAGCACAAAGCAAGTTGTTTTGCCTGTGAATGAGATGGCCAAATTGGGGTCGCTTGAATACTTGAGTGTTACATCATGCCATAATGTGGAGTCCATCTTTGGAGGAATAAAATTCCCTTCTCTTAAAACATTGTGCATTATGAACTGCCAGAGTCTAAAGTCAATGTCGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGGTTGTTGTGGCCTGCGATAATTTGGACATGGAACTGTGGAAGGGTGATCATGAAGAAGAAAGTCCGAAGCTGAAGTTAAAACTTGTATTTTTTAGCAATTTATCACAGCTGGTGGCATTGCCTAAATGGGTTCAGGAAGCTGCCAACTCCTTAGGGTGCTTGATTGTTTCAAATTGTCACAATATTGAAACACTTCCAGATTGGTTACCAGCTCTGACTAATCTGAAATCACTTCATATAATAGGTTGTCTAAATTTGGTATCTATCTCAGATAACATTCATCTTCTCACTGCACTTGAAATTTTGAAAATTAGTGGCTGTCCTAACTTATATAAAAAATATGAACCTAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAGACATTGTGATTTATAAACCAAAAGAACCTAAGAAGAATTAG 2598 0.3845 MAESFLFSIAESLIAKLASHALQEASRVVGVYDDLRNLGKTLSLVKAVLLDAQQKQDHNHQLREWLTQLKIVFSEAEDVLDEFECQTLQNKVVKAHGSTKDKVSHFFSTSNSLLFRYKMAQQIKYINNRLDKVAADRHKFSLQIIDVDTRVVHQRDMTHSRVSDSDVIGRKNDKEKIIKLLMQQNPNDDDTSLSVTPIVGIGGLGKTTLAKFVFNDNRIEECFPLKMWVCVSDDFDIKQLIIKIINSANDADVPPHQQNLNMLDLEQLQNQLKSKLSGKKFLLVLDDVWNEDRVKWVELRNLIQVGAAGSKVVVTTRSHSIASMMGTVPSHILEGLSEEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCKGVPLAVRTVGSLLFSKFEXSEWXYVSXXEIXNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYXFXSXEIXXIWGSLGLIALPKTNRTLEDVANQYLHELLSRSFLQDFENFGTSYSFRIHDLVHDLSLFVATDECLHVSFNIQNIPENIRHLSFAESSLFDNLVIKKSAAVRTVLFPKGAVGADGETILNTCLSKFKCLRVLNLDGLTFETLPRTIAKMKHLRYLNISNNRKIKRLPDSICKLQSLQVLIISGCIELEVLPKGLGKLINIRHLLFSTKQVVLPVNEMAKLGSLEYLSVTSCHNVESIFGGIKFPSLKTLCIMNCQSLKSMSLDGQNFPELETLVVVACDNLDMELWKGDHEEESPKLKLKLVFFSNLSQLVALPKWVQEAANSLGCLIVSNCHNIETLPDWLPALTNLKSLHIIGCLNLVSISDNIHLLTALEILKISGCPNLYKKYEPNVGEFWPKISHIKDIVIYKPKEPKKN* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0264 865 Pfam Leucine rich repeat 579 634 IPR001611 GO:0005515
Vra3g0264 865 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vra3g0264 865 Gene3D - 10 124 - -
Vra3g0264 865 CDD RX-CC_like 2 134 IPR038005 -
Vra3g0264 865 PRINTS Disease resistance protein signature 195 210 - -
Vra3g0264 865 PRINTS Disease resistance protein signature 275 289 - -
Vra3g0264 865 PRINTS Disease resistance protein signature 372 386 - -
Vra3g0264 865 PRINTS Disease resistance protein signature 621 637 - -
Vra3g0264 865 Gene3D - 420 508 IPR036388 -
Vra3g0264 865 PANTHER OS08G0543100 PROTEIN 25 835 - -
Vra3g0264 865 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vra3g0264 865 PANTHER DISEASE RESISTANCE PROTEIN RP 25 835 IPR044974 GO:0006952
Vra3g0264 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 434 IPR027417 -
Vra3g0264 865 Gene3D - 149 330 IPR027417 -
Vra3g0264 865 Gene3D - 335 419 IPR042197 -
Vra3g0264 865 Gene3D Ribonuclease Inhibitor 743 844 IPR032675 -
Vra3g0264 865 Gene3D Ribonuclease Inhibitor 519 736 IPR032675 -
Vra3g0264 865 SUPERFAMILY L domain-like 498 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0264 Vra-Chr3 3004557 3007579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0264 579 676 WRKY Transcription Factor Family AT4G12020 30.612 2.33e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0264 - - pvu:PHAVU_001G133600g 1216.83